Evidence map›Paper›PMID 24317337›Full record

ReviewVirulence2014

Metagenomics and novel gene discovery: promise and potential for novel therapeutics.

Eamonn P Culligan, Roy D Sleator, Julian R Marchesi, Colin Hill

Abstract readReview
In one paragraph

Review in Virulence, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Comparison of the urinary microbiome in men who have sex with men with and without Chlamydia trachomatis infection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Metagenomic characterization of bacterial biofilm in four food processing plants in Colombia.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  18. Article
  19. Sodium, hypertension, and the gut: does the gut microbiota go salty?American journal of physiology. Heart and circulatory physiology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Eamonn P CulliganAlimentary Pharmabiotic Centre; University College Cork; Cork, Ireland; School of Microbiology; University College Cork; Cork, Ireland.
Roy D SleatorAlimentary Pharmabiotic Centre; University College Cork; Cork, Ireland; Department of Biological Sciences; Cork Institute of Technology; Bishopstown, Cork, Ireland.
Julian R MarchesiAlimentary Pharmabiotic Centre; University College Cork; Cork, Ireland; Cardiff School of Biosciences; Cardiff University; Cardiff, UK; Department of Hepatology and Gastroenterology; Imperial College London; London, UK.
Colin HillAlimentary Pharmabiotic Centre; University College Cork; Cork, Ireland; School of Microbiology; University College Cork; Cork, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metagenomics provides a means of assessing the total genetic pool of all the microbes in a particular environment, in a culture-independent manner. It has revealed unprecedented diversity in microbial community composition, which is further reflected in the encoded functional diversity of the genomes, a large proportion of which consists of novel genes. Herein, we review both sequence-based and functional metagenomic methods to uncover novel genes and outline some of the associated problems of each type of approach, as well as potential solutions. Furthermore, we discuss the potential for metagenomic biotherapeutic discovery, with a particular focus on the human gut microbiome and finally, we outline how the discovery of novel genes may be used to create bioengineered probiotics.

Indexed as

MetagenomeBiological ProductsDrug DiscoveryEnvironmental MicrobiologyGenetic Association StudiesHumansMetagenomicsBiological Productsbioengineered probioticsbiotherapeuticsfunctional metagenomicsgut microbiomemetabiotechnologymetagenomicsmicrobiotanovel gene discovery

Identifiers

PMID24317337
PMCPMC3979868

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.