Evidence map›Paper›PMID 24317199›Full record

ArticleCell death and differentiation2014

Autophagy is required for zebrafish caudal fin regeneration.

M Varga, M Sass, D Papp, K Takács-Vellai, J Kobolak, A Dinnyés, D J Klionsky, T Vellai

Open access · bronzeAbstract read
In one paragraph

Article in Cell death and differentiation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 2 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 2 syntheses or guidelines pooled it, 77 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

M VargaDepartment of Genetics, Eötvös Loránd University, Budapest, Hungary.
M SassDepartment of Anatomy, Cell and Developmental Biology, Eötvös Loránd University, Budapest, Hungary.
D PappDepartment of Genetics, Eötvös Loránd University, Budapest, Hungary.
K Takács-VellaiDepartment of Genetics, Eötvös Loránd University, Budapest, Hungary.
J KobolakBioTalentum Ltd., H-2100, Gödöllő, Hungary.
A DinnyésBioTalentum Ltd., H-2100, Gödöllő, Hungary.
D J KlionskyLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
T VellaiDepartment of Genetics, Eötvös Loránd University, Budapest, Hungary.
Eötvös Loránd University · HUBioTalentum (Hungary) · HUUniversity of Michigan–Ann Arbor · US

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
NIGMS NIH HHS GM053396NIGMS NIH HHS R01 GM053396
6 · The paper itself

Abstract

Regeneration is the ability of multicellular organisms to replace damaged tissues and regrow lost body parts. This process relies on cell fate transformation that involves changes in gene expression as well as in the composition of the cytoplasmic compartment, and exhibits a characteristic age-related decline. Here, we present evidence that genetic and pharmacological inhibition of autophagy - a lysosome-mediated self-degradation process of eukaryotic cells, which has been implicated in extensive cellular remodelling and aging - impairs the regeneration of amputated caudal fins in the zebrafish (Danio rerio). Thus, autophagy is required for injury-induced tissue renewal. We further show that upregulation of autophagy in the regeneration zone occurs downstream of mitogen-activated protein kinase/extracellular signal-regulated kinase signalling to protect cells from undergoing apoptosis and enable cytosolic restructuring underlying terminal cell fate determination. This novel cellular function of the autophagic process in regeneration implies that the role of cellular self-digestion in differentiation and tissue patterning is more fundamental than previously thought.

Indexed as

AutophagyRegenerationAnimal FinsAnimalsAutophagy-Related Protein 5ButadienesEnzyme InhibitorsExtracellular Signal-Regulated MAP KinasesMacrolidesMitogen-Activated Protein KinasesNitrilesOligonucleotides, AntisenseSignal TransductionZebrafishZebrafish ProteinsAtg5 protein, zebrafishAutophagy-Related Protein 5bafilomycin A1ButadienesEnzyme InhibitorsExtracellular Signal-Regulated MAP KinasesMacrolidesMitogen-Activated Protein KinasesNitrilesOligonucleotides, AntisenseU 0126Zebrafish Proteins

Identifiers

PMID24317199
PMCPMC3950318
OpenAlexW2006148298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.