Evidence map›Paper›PMID 24316986›Full record

ArticleStem cell research2014

Pluripotency factors and Polycomb Group proteins repress aryl hydrocarbon receptor expression in murine embryonic stem cells.

Chia-I Ko, Qin Wang, Yunxia Fan, Ying Xia, Alvaro Puga

Open access · hybridAbstract read
In one paragraph

Article in Stem cell research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. TCDD alters essential transcriptional regulators of osteogenic differentiation in multipotent mesenchymal stem cells.Toxicological sciences : an official journal of the Society of Toxicology · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Aryl Hydrocarbon Receptor: From Homeostasis to Tumor Progression.Frontiers in cell and developmental biology · 2022
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Evidence for Aryl hydrocarbon Receptor-Mediated Inhibition of Osteoblast Differentiation in Human Mesenchymal Stem Cells.Toxicological sciences : an official journal of the Society of Toxicology · 2019
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Chia-I KoDepartment of Environmental Health and Center for Environmental Genetics, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA.
Qin WangDepartment of Environmental Health and Center for Environmental Genetics, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA.
Yunxia FanDepartment of Environmental Health and Center for Environmental Genetics, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA.
Ying XiaDepartment of Environmental Health and Center for Environmental Genetics, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA.
Alvaro PugaDepartment of Environmental Health and Center for Environmental Genetics, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA. Electronic address: Alvaro.Puga@uc.edu.
University of Cincinnati Medical Center · US

Funding

REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
MOLECULAR MECHANISMS OF COMPLEX MIXTURE TOXICITYR01ES010807 · NIEHS · UNIVERSITY OF CINCINNATI · PI PUGA, ALVARO · 2001 to 2021
$8.0M
MOLECULAR MECHANISMS OF DIOXIN ACTIONR01ES006273 · NIEHS · UNIVERSITY OF CINCINNATI · PI PUGA, ALVARO · 1993 to 2015
$4.6M
Gene-Environment Interactions in the Fetal Origin of Adult Cardiac DiseaseR01ES024744 · NIEHS · UNIVERSITY OF CINCINNATI · PI PUGA, ALVARO, RUBINSTEIN, JACK · 2015 to 2019
$2.4M
Molecular Mechanisms of Dioxin ActionR56ES006273 · NIEHS · UNIVERSITY OF CINCINNATI · PI PUGA, ALVARO · 2009 to 2009
$454k
NIEHS NIH HHS P30 ES006096NIEHS NIH HHS P30 ES06096NIEHS NIH HHS R01 ES006273NIEHS NIH HHS R01 ES010807NIEHS NIH HHS R01 ES024744NIEHS NIH HHS R01 ES06273NIEHS NIH HHS R01 ES10807NIEHS NIH HHS R56 ES006273
6 · The paper itself

Abstract

The aryl hydrocarbon receptor (AHR) is a transcription factor and environmental sensor that regulates expression of genes involved in drug-metabolism and cell cycle regulation. Chromatin immunoprecipitation analyses, Ahr ablation in mice and studies with orthologous genes in invertebrates suggest that AHR may also play a significant role in embryonic development. To address this hypothesis, we studied the regulation of Ahr expression in mouse embryonic stem cells and their differentiated progeny. In ES cells, interactions between OCT3/4, NANOG, SOX2 and Polycomb Group proteins at the Ahr promoter repress AHR expression, which can also be repressed by ectopic expression of reprogramming factors in hepatoma cells. In ES cells, unproductive RNA polymerase II binds at the Ahr transcription start site and drives the synthesis of short abortive transcripts. Activation of Ahr expression during differentiation follows from reversal of repressive marks in Ahr promoter chromatin, release of pluripotency factors and PcG proteins, binding of Sp factors, establishment of histone marks of open chromatin, and engagement of active RNAPII to drive full-length RNA transcript elongation. Our results suggest that reversible Ahr repression in ES cells holds the gene poised for expression and allows for a quick switch to activation during embryonic development.

Indexed as

Gene Expression RegulationAnimalsCell DifferentiationCells, CulturedChromatinEmbryonic Stem CellsHistonesKruppel-Like Factor 4MiceMice, Inbred C57BLPhosphorylationPolycomb-Group ProteinsPromoter Regions, GeneticProtein BindingReceptors, Aryl HydrocarbonRNA Polymerase IIChromatinHistonesKlf4 protein, mouseKruppel-Like Factor 4Polycomb-Group ProteinsReceptors, Aryl HydrocarbonRNA Polymerase IISp3 Transcription FactorTranscription Factors2,3,7,8-tetrachlorodibenzo-p-dioxinacetylated histone H3acetylated lysine-27 of histone H3acetylated lysine-9 of histone H3AHRAhREAh receptor nuclear translocatorAHR response elementARNTaryl hydrocarbon receptorbasic helix–loop–helix/Per-ARNT-SimbHLH/PAScarboxyl-terminal repeat domainChIPchromatin immunoprecipitationCTDEBembryoid bodiesembryonic stem cellsEMTenhancer of zeste homolog 2epithelial-to-mesenchymal transitionESCEZH2H3acH3K27acH3K27me3/2/1H3K36me3H3K4me3/2/1H3K9acH3K9me3/2/1histone methyltransferaseHMTICMinduced pluripotent stem cellsinner-cell-massiPSCKDM6A/Bknock outKOlysine demethylase 6A and 6Bmesenchymal-to-epithelial transitionMETMLLmyeloid/lymphoid or mix-lineage leukemiaOCT3/4, SOX2, KLF4, MYCOSKMPcGPolycomb Group proteinsPolycomb repressive complexes 1 and 2PRC1/2RING1Bring finger protein 1BRNAPIIRNAPII (S5p(+)S2p(+))RNAPII (S5p(+)S2p(−))RNA polymerase IIRNA polymerase II hyperphosphorylated in CTD serine-5 and serine-2RNA polymerase II phosphorylated in CTD serine-5 but not serine-2suppressor of zeste 12 homologSUZ12TCDDTEStranscription end sitetranscription start sitetri/di/mono-methylated lysine-27 of histone H3tri/di/mono-methylated lysine-4 of histone H3tri/di/mono-methylated lysine-9 of histone H3tri-methylated lysine-36 of histone H3Trithorax Group proteinsTSSTxG

Identifiers

PMID24316986
PMCPMC3896086
OpenAlexW2062133273

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.