Evidence map›Paper›PMID 24316576›Full record

ArticleNucleic acids research2014

Ensembl 2014.

Paul Flicek, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Konstantinos Billis, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Stephen Fitzgerald and 42 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 858 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
858citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

858 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  15. Article
  16. Human long noncoding RNAJournal of virology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

798 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors.

Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD and Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
M Ridwan Amode
Daniel Barrell
Kathryn Beal
Konstantinos Billis
Simon Brent
Denise Carvalho-Silva
Peter Clapham
Guy Coates
Stephen Fitzgerald
Laurent Gil
Carlos García Girón
Leo Gordon
Thibaut Hourlier
Sarah Hunt
Nathan Johnson
Thomas Juettemann
Andreas K Kähäri
Stephen Keenan
Eugene Kulesha
Fergal J Martin
Thomas Maurel
William M McLaren
Daniel N Murphy
Rishi Nag
Bert Overduin
Miguel Pignatelli
Bethan Pritchard
Emily Pritchard
Harpreet S Riat
Magali Ruffier
Daniel Sheppard
Kieron Taylor
Anja Thormann
Stephen J Trevanion
Alessandro Vullo
Steven P Wilder
Mark Wilson
Amonida Zadissa
Bronwen L Aken
Ewan Birney
Fiona Cunningham
Jennifer Harrow
Javier Herrero
Tim J P Hubbard
Rhoda Kinsella
Matthieu Muffato
Anne Parker
Giulietta Spudich
Andy Yates
Daniel R Zerbino
Stephen M J Searle

Funding

GENCODE Resource ProjectU41HG007234 · NHGRI · SANGER INSTITUTE · PI FLICEK, PAUL · 2013 to 2020
$20.3M
Integrated human genome annotation: generation of a reference gene setU54HG004555 · NHGRI · SANGER INSTITUTE · PI HUBBARD, TIMOTHY JOHN · 2007 to 2012
$11.2M
Functional analysis of the zebrafish genome through RNA-seq and ribosome profileR01HD074078 · NICHD · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J · 2012 to 2016
$2.3M
Whole genome assembly resources for aquatic models of human diseaseR24RR032658 · NCRR · WASHINGTON UNIVERSITY · PI WARREN, WESLEY CHARLES · 2011 to 2011
$330k
Biotechnology and Biological Sciences Research Council BB/E011640/1Biotechnology and Biological Sciences Research Council BB/I025360/1Biotechnology and Biological Sciences Research Council BB/I025506/1Biotechnology and Biological Sciences Research Council BB/K009524/1NCRR NIH HHS 1R24RR032658NCRR NIH HHS R24 RR032658NHGRI NIH HHS U41 HG007234NHGRI NIH HHS U41HG007234NHGRI NIH HHS U54 HG004555NICHD NIH HHS 1R01HD074078NICHD NIH HHS R01 HD074078Wellcome Trust 095908Wellcome Trust WT098051
6 · The paper itself

Abstract

Ensembl (http://www.ensembl.org) creates tools and data resources to facilitate genomic analysis in chordate species with an emphasis on human, major vertebrate model organisms and farm animals. Over the past year we have increased the number of species that we support to 77 and expanded our genome browser with a new scrollable overview and improved variation and phenotype views. We also report updates to our core datasets and improvements to our gene homology relationships from the addition of new species. Our REST service has been extended with additional support for comparative genomics and ontology information. Finally, we provide updated information about our methods for data access and resources for user training.

Indexed as

Databases, GeneticGenomicsAnimalsChordataGenetic VariationHumansInternetMiceMolecular Sequence AnnotationPhenotypeRats

Identifiers

PMID24316576
PMCPMC3964975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.