Evidence map›Paper›PMID 24316330›Full record

ArticleGenomics, proteomics & bioinformatics2013

Hands-on workshops as an effective means of learning advanced technologies including genomics, proteomics and bioinformatics.

Nichole Reisdorph, Robert Stearman, Katerina Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica Prenni, David J Erle, Christopher Coldren, Kevin Schey, Alexey Nesvizhskii and 1 more

Abstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Meet-U: Educating through research immersion.PLoS computational biology · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nichole ReisdorphDepartment of Immunology, National Jewish Health, Denver, CO 80206, USA. Electronic address: ReisdorphN@NJHealth.org.
Robert StearmanDepartment of Medicine, Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Katerina KechrisDepartment of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO 80045, USA.
Tzu Lip PhangDepartment of Medicine, Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Richard ReisdorphDepartment of Pediatrics, National Jewish Health, Denver, CO 80206, USA.
Jessica PrenniDepartment of Biochemistry and Molecular Biology, Proteomics and Metabolomics Facility, Colorado State University, Fort Collins, CO 80523, USA.
David J ErleLung Biology Center, Department of Medicine, University of California, San Francisco, CA 94143, USA.
Christopher ColdrenDepartment of Medicine, Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Kevin ScheyDepartment of Biochemistry and Mass Spectrometry Research Center, Vanderbilt School of Medicine, Nashville, TN 37027, USA.
Alexey NesvizhskiiDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Mark GeraciDepartment of Medicine, Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado School of Medicine, Aurora, CO 80045, USA.

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Tissue Bank and Biomarkers CoreP50CA058187 · NCI · UNIVERSITY OF COLORADO DENVER · PI MILLER, YORK E · 1992 to 2018
$43.8M
Proteomics & Genomics Hands-On Workshop: From Sample Preparation to Data AnalysisT15HL086386 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI REISDORPH, NICHOLE A · 2006 to 2009
$568k
ION TRAP for NJCS10RR023703 · NCRR · NATIONAL JEWISH HEALTH · PI REISDORPH, NICHOLE A · 2008 to 2008
$435k
NCATS NIH HHS UL1 TR001082NCI NIH HHS P50 CA058187NCRR NIH HHS S10 RR023703NHLBI NIH HHS T15 HL086386NHLBI NIH HHS T15HL086386
6 · The paper itself

Abstract

Genomics and proteomics have emerged as key technologies in biomedical research, resulting in a surge of interest in training by investigators keen to incorporate these technologies into their research. At least two types of training can be envisioned in order to produce meaningful results, quality publications and successful grant applications: (1) immediate short-term training workshops and (2) long-term graduate education or visiting scientist programs. We aimed to fill the former need by providing a comprehensive hands-on training course in genomics, proteomics and informatics in a coherent, experimentally-based framework. This was accomplished through a National Heart, Lung, and Blood Institute (NHLBI)-sponsored 10-day Genomics and Proteomics Hands-on Workshop held at National Jewish Health (NJH) and the University of Colorado School of Medicine (UCD). The course content included comprehensive lectures and laboratories in mass spectrometry and genomics technologies, extensive hands-on experience with instrumentation and software, video demonstrations, optional workshops, online sessions, invited keynote speakers, and local and national guest faculty. Here we describe the detailed curriculum and present the results of short- and long-term evaluations from course attendees. Our educational program consistently received positive reviews from participants and had a substantial impact on grant writing and review, manuscript submissions and publications.

Indexed as

Biomedical ResearchComputational BiologyCurriculumEducationHumansSoftwareBioinformaticsGenomicsHands-onMass spectrometryProteomicsWorkshops

Identifiers

PMID24316330
PMCPMC4049090

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.