Evidence map›Paper›PMID 24315451›Full record

ArticleThe Journal of allergy and clinical immunology2014

Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.

Ralf Jp van der Valk, Liesbeth Duijts, Nicolas J Timpson, Muhammad T Salam, Marie Standl, John A Curtin, Jon Genuneit, Marjan Kerhof, Eskil Kreiner-Møller, Alejandro Cáceres and 49 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in The Journal of allergy and clinical immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Ancestry and genetic associations with bronchopulmonary dysplasia in preterm infants.American journal of physiology. Lung cellular and molecular physiology · 2018
    Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetic effects of allergen-specific IgE levels on exhaled nitric oxide in schoolchildren with asthma: The STOPPA twin study.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. A decade of research on the 17q12-21 asthma locus: Piecing together the puzzle.The Journal of allergy and clinical immunology · 2018
    Review
  14. Article
  15. Article
  16. Review
  17. Genetic and epigenetic susceptibility of airway inflammation to PMEnvironmental health : a global access science source · 2017
    Article
  18. Article
  19. A common variant in RAB27A gene is associated with fractional exhaled nitric oxide levels in adults.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2015
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

59 authors at 20 institutions in 9 countries.

Ralf Jp van der Valk *The Generation R Study Group, Erasmus Medical Center, Rotterdam, The Netherlands.
Liesbeth Duijts *Department of Pediatrics, Erasmus Medical Center, Rotterdam, The Netherlands.
Nicolas J TimpsonSchool of Social and Community Medicine, University of Bristol, Uk.
Muhammad T SalamDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
Marie StandlInstitute of Epidemiology I, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
John A CurtinUniversity of Manchester, Manchester Academic Health Science Centre, University Hospital of South Manchester NHS Foundation Trust, Manchester, United Kingdom.
Jon GenuneitInstitute of Epidemiology and Medical Biometry, Ulm University, Ulm, Germany.
Marjan KerhofUniversity Medical Center Groningen, University of Groningen, Department of Pediatric Pulmonology and Pediatric Allergology, Beatrix Children's Hospital.
Eskil Kreiner-MøllerCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, The Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.
Alejandro CáceresCenter for Research in Environmental Epidemiology (CREAL), Barcelona, Catalonia, Spain.
Anna GrefInstitute of Environmental Medicine and Centre for Allergy Research, Karolinska Institutet, Stockholm, Sweden.
Liming L LiangDepartment of Epidemiology, Harvard School of Public Health, Boston, USA.
H Rob TaalThe Generation R Study Group, Erasmus Medical Center, Rotterdam, The Netherlands.
Emmanuelle BouzigonInserm, UMR 946, Genetic Variation and Human Diseases Unit, F-75010, Paris, France.
Florence DemenaisInserm, UMR 946, Genetic Variation and Human Diseases Unit, F-75010, Paris, France.
Rachel NadifInserm, Centre for research in Epidemiology and Population Health (CEPH), U1018, Respiratory and Environmental Epidemiology Team, F-94807, Villejuif, France.
Carole OberDepartment of Human Genetics, University of Chicago, Chicago, IL 60637.
Emma E ThompsonDepartment of Human Genetics, University of Chicago, Chicago, IL 60637.
Karol EstradaDepartment of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands.
Albert HofmanDepartment of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands.
André G UitterlindenThe Generation R Study Group, Erasmus Medical Center, Rotterdam, The Netherlands.
Cornélia van DuijnDepartment of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands.
Fernando RivadeneiraDepartment of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands.
Xia LiDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
Sandrah P EckelDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
Kiros BerhaneDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
W James GaudermanDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
Raquel GranellSchool of Social and Community Medicine, University of Bristol, Uk.
David M EvansSchool of Social and Community Medicine, University of Bristol, Uk.
Beate St PourcainSchool of Social and Community Medicine, University of Bristol, Uk.
Wendy McArdleSchool of Social and Community Medicine, University of Bristol, Uk.
John P KempSchool of Social and Community Medicine, University of Bristol, Uk.
George Davey SmithSchool of Social and Community Medicine, University of Bristol, Uk.
Carla Mt TieslerInstitute of Epidemiology I, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Claudia FlexederInstitute of Epidemiology I, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Angela SimpsonUniversity of Manchester, Manchester Academic Health Science Centre, University Hospital of South Manchester NHS Foundation Trust, Manchester, United Kingdom.
Clare S MurrayUniversity of Manchester, Manchester Academic Health Science Centre, University Hospital of South Manchester NHS Foundation Trust, Manchester, United Kingdom.
Oliver FuchsInselspital, Universitätsspital, Bern, Universitätklinik für Kinderheilkunde, Bern, Switzerland.
Dirkje S PostmaUniversity of Groningen, University Medical Center Groningen, Department of Pulmonology, Groningen, The Netherlands.
Klaus BønnelykkeCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, The Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.
Maties TorrentSpanish consortium for Research on Epidemiology and Public Health (CIBERESP), Spain.
Martin AnderssonDepartment of Public Health Sciences, Karolinska Institutet, Stockholm, Sweden.
Patrick SleimanCenter for Applied Genomics, Abramson Research Center, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Hakon HakonarsonCenter for Applied Genomics, Abramson Research Center, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
William O CooksonNational Heart and Lung Institute, Imperial College London, London SW3 6LY.
Miriam F MoffattNational Heart and Lung Institute, Imperial College London, London SW3 6LY.
Lavinia PaternosterSchool of Social and Community Medicine, University of Bristol, Uk.
Erik MelénInstitute of Environmental Medicine and Centre for Allergy Research, Karolinska Institutet, Stockholm, Sweden.
Jordi SunyerCenter for Research in Environmental Epidemiology (CREAL), Barcelona, Catalonia, Spain.
Hans BisgaardCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, The Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.
Gerard H KoppelmanUniversity Medical Center Groningen, University of Groningen, Department of Pediatric Pulmonology and Pediatric Allergology, Beatrix Children's Hospital.
Markus EgeDr. von Hauner Children's Hospital, Ludwig Maximilian University, Munich, Germany.
Adnan CustovicUniversity of Manchester, Manchester Academic Health Science Centre, University Hospital of South Manchester NHS Foundation Trust, Manchester, United Kingdom.
Joachim HeinrichInstitute of Epidemiology I, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Frank D GillilandDepartment of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, USA.
Alexander J HendersonSchool of Social and Community Medicine, University of Bristol, Uk.
Vincent Wv JaddoeThe Generation R Study Group, Erasmus Medical Center, Rotterdam, The Netherlands.
Johan C de JongsteDepartment of Pediatrics, Erasmus Medical Center, Rotterdam, The Netherlands.
EArly Genetics & Lifecourse Epidemiology (EAGLE) Consortium
Erasmus MC · NLUniversity of Bristol · GBUniversity of Southern California · USHelmholtz Zentrum München · DEKarolinska Institutet · SEManchester Academic Health Science Centre · GBCopenhagen Prospective Studies on Asthma in Childhood · DKLudwig-Maximilians-Universität München · DEUniversity of Chicago · USUniversity of Groningen · NLCenter for Research in Environmental Epidemiology · ESChildren's Hospital of Philadelphia · USDélégation Paris 7 · FRHarvard University · USHospital del Mar Research Institute · ESImperial College London · GBLung Institute · USServei de Salut de les Illes Balears · ESSorbonne Paris Cité · FRUniversität Ulm · DE

Funding

Translational Research Support CoreP30ES007048 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Joseph Leo Wiemels · 1996 to 2026
$46.4M
Urban Air Pollution and Children's Respiratory HealthP01ES011627 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AVOL, EDWARD · 2002 to 2011
$30.2M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Sex-Specific Genetic Architecture of Asthma-Associated Quantitative TraitsR01HL085197 · NHLBI · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 2007 to 2015
$7.6M
Urban Air Pollution &Persistent Early Life AsthmaP01ES009581 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GILLILAND, FRANK D. · 1999 to 2010
$6.8M
FACTORS IN CHILDHOOD LUNG SUSCEPTIBILITY TO POLLUTIONR01HL061768 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GILLILAND, FRANK D. · 1999 to 2008
$4.4M
INTEGRATIVE GENETIC APPROACHES TO GENE-AIR POLLUTION INTERACTIONS IN ASTHMAR01ES021801 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AKBARI, OMID, ALLAYEE, HOOMAN · 2012 to 2016
$3.9M
Air Pollution, Inflammation and New Onset AsthmaR01HL076647 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GILLILAND, FRANK D. · 2005 to 2009
$3.6M
Early detection of adverse respiratory effects from air pollutionR01ES023262 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BERHANE, KIROS T, GILLILAND, FRANK D. · 2013 to 2016
$2.0M
Methods for modeling air pollution effects on exhaled biomarkersK22ES022987 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ECKEL, SANDRAH PROCTOR · 2013 to 2015
$478k
Medical Research Council G0600705Medical Research Council G0601361Medical Research Council G1000758Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_UU_12013/1Medical Research Council MC_UU_12013/3Medical Research Council MC_UU_12013/4Medical Research Council MR/J012165/1Medical Research Council MR/K002449/1NCATS NIH HHS UL1 TR000430NHLBI NIH HHS R01 HL061768NHLBI NIH HHS R01 HL076647NHLBI NIH HHS R01 HL085197NIEHS NIH HHS K22 ES022987NIEHS NIH HHS P01 ES009581NIEHS NIH HHS P01 ES011627NIEHS NIH HHS P30 ES007048NIEHS NIH HHS R01 ES021801NIEHS NIH HHS R01 ES023262Wellcome Trust 097117Wellcome Trust 102215Wellcome Trust WT083431MA
6 · The paper itself

Abstract

backgroundThe fraction of exhaled nitric oxide (Feno) value is a biomarker of eosinophilic airway inflammation and is associated with childhood asthma. Identification of common genetic variants associated with childhood Feno values might help to define biological mechanisms related to specific asthma phenotypes.

objectiveWe sought to identify the genetic variants associated with childhood Feno values and their relation with asthma.

methodsFeno values were measured in children age 5 to 15 years. In 14 genome-wide association studies (N = 8,858), we examined the associations of approximately 2.5 million single nucleotide polymorphisms (SNPs) with Feno values. Subsequently, we assessed whether significant SNPs were expression quantitative trait loci in genome-wide expression data sets of lymphoblastoid cell lines (n = 1,830) and were related to asthma in a previously published genome-wide association data set (cases, n = 10,365; control subjects: n = 16,110).

resultsWe identified 3 SNPs associated with Feno values: rs3751972 in LYR motif containing 9 (LYRM9; P = 1.97 × 10(-10)) and rs944722 in inducible nitric oxide synthase 2 (NOS2; P = 1.28 × 10(-9)), both of which are located at 17q11.2-q12, and rs8069176 near gasdermin B (GSDMB; P = 1.88 × 10(-8)) at 17q12-q21. We found a cis expression quantitative trait locus for the transcript soluble galactoside-binding lectin 9 (LGALS9) that is in linkage disequilibrium with rs944722. rs8069176 was associated with GSDMB and ORM1-like 3 (ORMDL3) expression. rs8069176 at 17q12-q21, but not rs3751972 and rs944722 at 17q11.2-q12, were associated with physician-diagnosed asthma.

conclusionThis study identified 3 variants associated with Feno values, explaining 0.95% of the variance. Identification of functional SNPs and haplotypes in these regions might provide novel insight into the regulation of Feno values. This study highlights that both shared and distinct genetic factors affect Feno values and childhood asthma.

Indexed as

Chromosomes, Human, Pair 17Polymorphism, Single NucleotideAdolescentAsthmaBiomarkersBreath TestsChildChild, PreschoolExhalationFemaleGasderminsGenome-Wide Association StudyHaplotypesHumansLinkage DisequilibriumMaleBiomarkersGasderminsGSDMA protein, humanMolecular ChaperonesNeoplasm ProteinsNitric OxideNitric Oxide Synthase Type IINOS2 protein, humanAirway inflammationasthma phenotypesbiomarkergeneticsgenome-wide association study

Identifiers

PMID24315451
PMCPMC4334587
OpenAlexW2106575745

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.