Evidence map›Paper›PMID 24314667›Full record

ArticleVirology2014

Specific sequences commonly found in the V3 domain of HIV-1 subtype C isolates affect the overall conformation of native Env and induce a neutralization-resistant phenotype independent of V1/V2 masking.

Aidy Salomon, Chavdar Krachmarov, Zhong Lai, William Honnen, Barry S Zingman, Julie Sarlo, Miroslaw K Gorny, Susan Zolla-Pazner, James E Robinson, Abraham Pinter

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Aidy SalomonPublic Health Research Institute Center, Rutgers University, 225 Warren Street, Newark, NJ 07103, USA.
Chavdar Krachmarov
Zhong Lai
William Honnen
Barry S Zingman
Julie Sarlo
Miroslaw K Gorny
Susan Zolla-Pazner
James E Robinson
Abraham Pinter
Rutgers, The State University of New Jersey · USAlbert Einstein College of Medicine · USNew York University · USTulane University · USVA NY Harbor Healthcare System · US

Funding

Vaccines to Induce Functional Antibodies Targeting the V2 Loop P01AI100151 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, SHIXIA · 2012 to 2017
$15.4M
Viral Immunology CoreP01AI088610 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2010 to 2014
$15.3M
Novel epitopes that mediate broad neutralization of clade B and C HIV-1 isolatesU01AI078410 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2008 to 2012
$3.3M
Optimizing protective vaccine targets in the V1/V2 domain of HIV-1 gp120R01AI102718 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2012 to 2015
$2.7M
NIAID NIH HHS P01 AI088610NIAID NIH HHS P01AI088610-01NIAID NIH HHS P01 AI100151NIAID NIH HHS R01 AI102718NIAID NIH HHS U01 AI078410NIAID NIH HHS U01AI078410-01
6 · The paper itself

Abstract

Primary HIV-1 isolates are relatively resistant to neutralization by antibodies commonly induced after infection or vaccination. This is generally attributed to masking of sensitive epitopes by the V1/V2 domain and/or glycans situated at various positions in Env. Here we identified a novel masking effect mediated by subtype C-specific V3 sequences that contributes to the V1/V2-independent and glycan-independent neutralization resistance of chimeric and primary Envs to antibodies directed against multiple neutralization domains. Positions at several conserved charged and hydrophobic sites in the V3 crown and stem were also shown to affect neutralization phenotype. These results indicated that substitutions typically present in subtype C and related V3 sequences influence the overall conformation of native Env in a way that occludes multiple neutralization targets located both within and outside of the V3 domain, and may reflect an alternative mechanism for neutralization resistance that is particularly active in subtype C and related isolates.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntibodies, Monoclonalenv Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesHIV InfectionsHumansMolecular Sequence DataNeutralization TestsProtein ConformationSequence AlignmentAntibodies, Monoclonalenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesConformational effectEpitope maskingHIV-1Subtype CV3 domain

Identifiers

PMID24314667
PMCPMC3913561
OpenAlexW2085764227

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.