Evidence map›Paper›PMID 24314645›Full record

ArticleVirology2014

Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes.

Lark L Coffey, Brady L Page, Alexander L Greninger, Belinda L Herring, Richard C Russell, Stephen L Doggett, John Haniotis, Chunlin Wang, Xutao Deng, Eric L Delwart

Open access · greenAbstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. A Systematic Review on the Viruses ofTropical medicine and infectious disease · 2023
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Dissecting the Species-Specific Virome inFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Seroprevalence of arboviruses in Ecuador: Implications for improved surveillance.Biomedica : revista del Instituto Nacional de Salud · 2021
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Lark L CoffeyBlood Systems Research Institute, University of California, San Francisco, USA; Department of Laboratory Medicine, University of California, 270 Masonic Avenue, San Francisco, CA 94118, USA.
Brady L Page
Alexander L Greninger
Belinda L Herring
Richard C Russell
Stephen L Doggett
John Haniotis
Chunlin Wang
Xutao Deng
Eric L Delwart
University of California, San Francisco · USWestmead Hospital · AUGriffith University · AUStanford University · USThe University of Sydney · AU

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NHLBI NIH HHS R01 HL105770NHLBI NIH HHS R01HL105770NIGMS NIH HHS T32 GM007618
6 · The paper itself

Abstract

Viral metagenomics characterizes known and identifies unknown viruses based on sequence similarities to any previously sequenced viral genomes. A metagenomics approach was used to identify virus sequences in Australian mosquitoes causing cytopathic effects in inoculated mammalian cell cultures. Sequence comparisons revealed strains of Liao Ning virus (Reovirus, Seadornavirus), previously detected only in China, livestock-infecting Stretch Lagoon virus (Reovirus, Orbivirus), two novel dimarhabdoviruses, named Beaumont and North Creek viruses, and two novel orthobunyaviruses, named Murrumbidgee and Salt Ash viruses. The novel virus proteomes diverged by ≥ 50% relative to their closest previously genetically characterized viral relatives. Deep sequencing also generated genomes of Warrego and Wallal viruses, orbiviruses linked to kangaroo blindness, whose genomes had not been fully characterized. This study highlights viral metagenomics in concert with traditional arbovirus surveillance to characterize known and new arboviruses in field-collected mosquitoes. Follow-up epidemiological studies are required to determine whether the novel viruses infect humans.

Indexed as

AnimalsAustraliaBunyaviridae InfectionsCulicidaeGenome, ViralHigh-Throughput Nucleotide SequencingHumansInsect VectorsMolecular Sequence DataOrthobunyavirusPhylogenyRhabdoviridaeRhabdoviridae InfectionsSentinel SurveillanceABLVAfrican horse sickness virusAHSVAINOVAino virusAkabane virusAKAVAlfuy virusALFVAlmpiwar virusALMVArbovirus surveillanceAustraliaAustralian bat lyssavirusBanna virusBANVbarley yellow striate mosaicBarmah Forest virusBas-Congo virusBASVBeaumont virusBEAUVBEFVBFVbovine ephemeral fever virusBunyavirusBYSMCCHFVCharleville viruschikungunya virusCHIKVCHVVCoastal Plains virusCPVCrimean-Congo hemorrhagic fever virusDAff sigma virusDeep sequencingdengue virusDENVDMel sigma virusDObs sigma virusDouglas virusDOUVDrosophila affinis sigma virusDrosophila melanogaster sigma virusDrosophila obscura sigma virusEBLVEdge Hill virusEHDVEHVepizootic hemorrhagic disease virusEubenangee virusEUBVEuropean bat lyssavirusFacey's Paddock virusFPVGan Gan virusGGVHDOOVHumpty Doo virusIHNVinfectious hematopoietic necrosis virusJapanese encephalitis virusJEVKadiporo virusKDVKokobera virusKOKVKunjin virusKUNVLeanyer virusLEAVlettuce necrotic yellows viruslettuce yellow mottle virusLiao Ning virusLNVLNYVLYMoVmaize fine streak virusMapputta virusMAPVMFSVMosquitoMURBVMurray Valley encephalitis virusMurrumbidgee virusMVEVNCMVNORCVNorth Creek virusNorthern cereal mosaic virusNovel virusPeaton virusPEAVPeruvian horse sickness virusPHSVReovirusRhabdovirusRift Valley fever virusRoss River virusRRVRVFVSalt Ash virusSASHVsevere fever with thrombocytopenia syndrome virusSFTSVSindbis virusSINVSLOVspring viremia of carp virusStratford virusStretch Lagoon orbivirusSTRVSVCVThimiri virusTHIVTibrogargan virusTIBVTilligerry virusTILVTinaroo virusTINVTrubanaman virusTRUVvesicular stomatitis virusVHSVviral hemorrhagic septicemia virusVirus discoveryVSVWallal virusWALVWarrego virusWARVWest Nile virusWNV

Identifiers

PMID24314645
PMCPMC3870893
OpenAlexW2065347290

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.