Evidence map›Paper›PMID 24314642›Full record

ArticleVirology2014

The stability of secreted, acid-labile H77/JFH-1 hepatitis C virus (HCV) particles is altered by patient isolate genotype 1a p7 sequences.

Elizabeth Atkins, Ranjitha Tatineni, Hui Li, David Gretch, Mark Harris, Stephen Griffin

Open access · greenAbstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Elizabeth AtkinsSchool of Molecular & Cellular Biology & Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, West Yorkshire LS2 9JT, United Kingdom.
Ranjitha Tatineni
Hui Li
David Gretch
Mark Harris
Stephen Griffin
University of Leeds · GBUniversity of Washington · US

Funding

Viral Host Interactions in Hepatitis CR01AI066209 · NIAID · UNIVERSITY OF WASHINGTON · PI GRETCH, DAVID RICHARD · 2006 to 2010
$2.1M
Biotechnology and Biological Sciences Research CouncilMedical Research Council G0700124NIAID NIH HHS 1R01AI66209-01NIAID NIH HHS R01 AI066209Wellcome Trust 096670
6 · The paper itself

Abstract

Secreted infectious particles generated by the genotype 2a JFH-1 hepatitis C virus infectious clone are resistant to acidic pH, whereas intracellular virions remain acid-labile. Thus, JFH-1 particles are thought to undergo pH maturation as they are secreted from the cell. Here, we demonstrate that both infectious intracellular and secreted genotype 1a (H77)/JFH-1 chimaeric particles display enhanced acid sensitivity compared with JFH-1, although pH maturation still occurs upon release. Introduction of p7 sequences from genotype 1a infected HCV patients into the H77/JFH-1 background yielded variable effects on infectious particle production and sensitivity to small molecule inhibitors. However, two selected patient p7 sequences increased the acid stability of secreted, but not intracellular H77/JFH-1 particles, suggesting that p7 directly influences particle pH maturation via an as yet undefined mechanism. We propose that HCV particles vary in acid stability, and that this may be dictated by variations in both canonical structural proteins and p7.

Indexed as

Virus ReleaseAcidsAmino Acid SequenceCell LineGenotypeHepacivirusHepatitis CHumansMolecular Sequence DataSequence AlignmentViral ProteinsVirionViroporin ProteinsAcidsp7 protein, Hepatitis C virusViral ProteinsViroporin ProteinsDAAdirect-acting antiviralsDMEMDrug resistanceDulbecco's modified eagles mediumGAPDHgenotypeglyceraldehyde 3-phosphate dehydrogenaseGTHCCHCVhepatitis C virusIAVinfluenza A virusIon channel gatingM2matrix protein 2MeOHmethanolNatural virus variantsnon-structuralNSnuclear hepatocellular carcinomaParticle acid stabilityreverse phase high performance liquid chromatographyrp-HPLCTMtrans-membranevacuolar adenosine tri-phosphatasevATPaseViroporin

Identifiers

PMID24314642
PMCPMC7615703
OpenAlexW2138743794

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.