Evidence map›Paper›PMID 24314639›Full record

ArticleVirology2014

Modeling of the human rhinovirus C capsid suggests possible causes for antiviral drug resistance.

Holly A Basta, Shamaila Ashraf, Jean-Yves Sgro, Yury A Bochkov, James E Gern, Ann C Palmenberg

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Rhinovirus and asthma: Challenges and opportunities.Reviews in medical virology · 2021
    Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Atomic structure of a rhinovirus C, a virus species linked to severe childhood asthma.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Review
  14. Article
  15. Review
  16. Classification and evolution of human rhinoviruses.Methods in molecular biology (Clifton, N.J.) · 2015
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Holly A BastaInstitute for Molecular Virology, University of Wisconsin, 1525 Linden Drive, Madison, WI 53706, United States of America.
Shamaila Ashraf
Jean-Yves Sgro
Yury A Bochkov
James E Gern
Ann C Palmenberg
University of Wisconsin–Madison · US

Funding

Virus-Bacterial Interactions and Exacerba of AsthmaP01HL070831 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, DANIEL J, LEMANSKE, ROBERT F · 2002 to 2017
$31.3M
Wisconsin Infant Study Cohort (WISC)U19AI104317 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTINE Marie SEROOGY · 2013 to 2026
$22.5M
PROTEOLYTIC REGULATION OF PICORNAVIRAL MORPHOGENESISR01AI017331 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI PALMENBERG, ANN C. · 1985 to 2013
$3.7M
Cardioviral Proteases and Comparative Genome StructureR56AI017331 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI PALMENBERG, ANN C. · 2007 to 2007
$364k
NHLBI NIH HHS P01 HL070831NIAID NIH HHS AI17331NIAID NIH HHS R01 AI017331NIAID NIH HHS R56 AI017331NIAID NIH HHS U19 AI104317NIAID NIH HHS U19AI104317
6 · The paper itself

Abstract

Human rhinoviruses of the RV-C species are recently discovered pathogens with greater clinical significance than isolates in the RV-A+B species. The RV-C cannot be propagated in typical culture systems; so much of the virology is necessarily derivative, relying on comparative genomics, relative to the better studied RV-A+B. We developed a bioinformatics-based structural model for a C15 isolate. The model showed the VP1-3 capsid proteins retain their fundamental cores relative to the RV-A+B, but conserved, internal RV-C residues affect the shape and charge of the VP1 hydrophobic pocket that confers antiviral drug susceptibility. When predictions of the model were tested in organ cultures or ALI systems with recombinant C15 virus, there was a resistance to capsid-binding drugs, including pleconaril, BTA-188, WIN56291, WIN52035 and WIN52084. Unique to all RV-C, the model predicts conserved amino acids within the pocket and capsid surface pore leading to the pocket may correlate with this activity.

Indexed as

Drug Resistance, ViralAmino Acid SequenceAntiviral AgentsBinding SitesCapsidCapsid ProteinsHumansModels, MolecularMolecular Sequence DataPicornaviridae InfectionsRhinovirusSequence AlignmentAntiviral AgentsCapsid ProteinsAntiviral therapyCapsid structureDrug-binding pocketDrug resistanceModelPleconarilPoreRhinovirusRhinovirus C

Identifiers

PMID24314639
PMCPMC3878079
OpenAlexW2053793395

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.