Evidence map›Paper›PMID 24314081›Full record

ArticleBiophysical journal2013

Conformational dynamics of calcium-triggered activation of fusion by synaptotagmin.

Shyam S Krishnakumar, Daniel Kümmel, Sunny J Jones, Daniel T Radoff, Karin M Reinisch, James E Rothman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Symmetrical arrangement of proteins under release-ready vesicles in presynaptic terminals.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Article
  8. Article
  9. Structural basis for the clamping and CaNature communications · 2019
    Article
  10. Article
  11. Article
  12. Review
  13. Synaptotagmin oligomerization is essential for calcium control of regulated exocytosis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shyam S KrishnakumarDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut. Electronic address: shyam.krishnakumar@yale.edu.
Daniel Kümmel
Sunny J Jones
Daniel T Radoff
Karin M Reinisch
James E Rothman
Yale University · US

Funding

REGULATION OF EXOCYTOSIS STUDIES WITH FLIPPED SNARESR01GM071458 · NIGMS · YALE UNIVERSITY · PI ROTHMAN, JAMES · 2004 to 2015
$8.5M
Regulatory Mechanisms in Membrane TraffickingR01GM080616 · NIGMS · YALE UNIVERSITY · PI REINISCH, KARIN M · 2007 to 2018
$4.1M
NIGMS NIH HHS GM 071458NIGMS NIH HHS R01 GM071458NIGMS NIH HHS R01 GM080616
6 · The paper itself

Abstract

Synaptotagmin triggers rapid exocytosis of neurotransmitters from synaptic vesicles in response to Calcium (Ca(2+)) ions. Here, we use a novel Nanodisc-based system, designed to be a soluble mimetic of the clamped synaptic vesicle-bilayer junction, combined with fluorescence resonance energy transfer (FRET) spectroscopy to monitor the structural relationships among SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptor), Synaptotagmin C2 domains, and the lipid bilayer in real time during the Ca(2+)-activation process. We report that Synaptotagmin remains rigidly fixed on the partially assembled SNARE complex with no detectable internal rearrangement of its C2 domains, even as it rapidly inserts into the bilayer. We hypothesize that this straightforward, one-step physical mechanism could explain how this Ca(2+)- sensor rapidly activates neurotransmitter release from the clamped state.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceAnimalsCalciumFluorescence Resonance Energy TransferLipid BilayersMiceMolecular Sequence DataMutationProtein BindingProtein Structure, TertiarySynaptosomal-Associated Protein 25Synaptotagmin ICalciumLipid BilayersSnap25 protein, mouseSynaptosomal-Associated Protein 25Synaptotagmin ISyt1 protein, mouse

Identifiers

PMID24314081
PMCPMC3853086
OpenAlexW1969478178

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.