Evidence map›Paper›PMID 24314078›Full record

ArticleBiophysical journal2013

Factors determining the recruitment of inositol trisphosphate receptor channels during calcium puffs.

George D Dickinson, Ian Parker

Abstract read
In one paragraph

Article in Biophysical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Modeling IPBiophysical journal · 2023
    Article
  2. An integrate-and-fire approach to CaBiophysical journal · 2023
    Article
  3. Article
  4. Article
  5. Spatial-temporal patterning of CaSeminars in cell & developmental biology · 2019
    Review
  6. All three IPScience signaling · 2018
    Article
  7. Pulsed infrared releases CaJournal of neurophysiology · 2018
    Article
  8. Endogenous signalling pathways and caged IPJournal of cell science · 2017
    Article
  9. Whole-cell Currents Induced by Puff Application of GABA in Brain Slices.Journal of visualized experiments : JoVE · 2017
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

George D DickinsonDepartment of Neurobiology and Behavior, University of California, Irvine, CA. Electronic address: dickinsg@uci.edu.
Ian Parker

Funding

Multi-scale observation and modeling of IP3/Ca signalingR01GM065830 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI MAK, DON-ON DANIEL, PARKER, IAN · 2002 to 2017
$10.7M
Elementary Events of Intracellular Calcium SignalingR37GM048071 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI PARKER, IAN · 2011 to 2020
$5.3M
SPATIAL AND TEMPORAL ASPECTS OF INSP3 SIGNALLINGR01GM048071 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI PARKER, IAN · 1992 to 2010
$3.9M
NIGMS NIH HHS GM048071NIGMS NIH HHS GM065830NIGMS NIH HHS R01 GM048071NIGMS NIH HHS R01 GM065830NIGMS NIH HHS R37 GM048071
6 · The paper itself

Abstract

Puffs are localized, transient elevations in cytosolic Ca(2+) that serve both as the building blocks of global cellular Ca(2+) signals and as local signals in their own right. They arise from clustered inositol 1,4,5-trisphosphate receptor/channels (IP3Rs), whose openings are coordinated by Ca(2+)-induced Ca(2+) release (CICR). We utilized total internal reflection fluorescence imaging of Ca(2+) signals in neuroblastoma cells with single-channel resolution to elucidate the mechanisms determining the triggering, amplitudes, kinetics, and spatial spread of puffs. We find that any given channel in a cluster has a mean probability of ∼66% of opening following opening of an initial "trigger" channel, and the probability of puff triggering thus increases steeply with increasing number of channels in a cluster (cluster size). Mean puff amplitudes scale with cluster size, but individual amplitudes vary widely, even at sites of similar cluster size, displaying similar proportions of events involving any given number of the channels in the cluster. Stochastic variation in numbers of Ca(2+)-inhibited IP3Rs likely contributes to the variability of amplitudes of repeated puffs at a site but the amplitudes of successive puffs were uncorrelated, even though we observed statistical correlations between interpuff intervals and puff amplitudes. Initial puffs evoked following photorelease of IP3-which would not be subject to earlier Ca(2+)-inhibition-also showed wide variability, indicating that mechanisms such as stochastic variation in IP3 binding and channel recruitment by CICR further determine puff amplitudes. The mean termination time of puffs lengthened with increasing puff amplitude size, consistent with independent closings of channels after a given mean open time, but we found no correlation of termination time with cluster size independent of puff amplitude. The spatial extent of puffs increased with their amplitude, and puffs of similar size were of similar width, independent of cluster size.

Indexed as

Calcium SignalingCalciumCell Line, TumorHumansInositol 1,4,5-TrisphosphateInositol 1,4,5-Trisphosphate ReceptorsKineticsCalciumInositol 1,4,5-TrisphosphateInositol 1,4,5-Trisphosphate Receptors

Identifiers

PMID24314078
PMCPMC3853323

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.