Evidence map›Paper›PMID 24313393›Full record

ArticleACS synthetic biology2014

Genetically encoded sender-receiver system in 3D mammalian cell culture.

Andreia Carvalho, Diego Barcena Menendez, Vivek Raj Senthivel, Timo Zimmermann, Luis Diambra, Mark Isalan

Open access · greenAbstract readLetter
In one paragraph

Article in ACS synthetic biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Engineering pattern formation and morphogenesis.Biochemical Society transactions · 2020
    Review
  4. From Microbial Communities to Distributed Computing Systems.Frontiers in bioengineering and biotechnology · 2020
    Review
  5. Article
  6. Review
  7. Mammalian synthetic biology for studying the cell.The Journal of cell biology · 2017
    Review
  8. Article
  9. Review
  10. Synthetic biology meets tissue engineering.Biochemical Society transactions · 2016
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Andreia CarvalhoEMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG) , Dr. Aiguader 88, 08003 Barcelona, Spain.
Diego Barcena Menendez
Vivek Raj Senthivel
Timo Zimmermann
Luis Diambra
Mark Isalan
European Bioinformatics Institute · GBPompeu Fabra University · ESCentre for Genomic Regulation · ESPasqual Maragall Foundation · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Engineering spatial patterning in mammalian cells, employing entirely genetically encoded components, requires solving several problems. These include how to code secreted activator or inhibitor molecules and how to send concentration-dependent signals to neighboring cells, to control gene expression. The Madin-Darby Canine Kidney (MDCK) cell line is a potential engineering scaffold as it forms hollow spheres (cysts) in 3D culture and tubulates in response to extracellular hepatocyte growth factor (HGF). We first aimed to graft a synthetic patterning system onto single developing MDCK cysts. We therefore developed a new localized transfection method to engineer distinct sender and receiver regions. A stable reporter line enabled reversible EGFP activation by HGF and modulation by a secreted repressor (a truncated HGF variant, NK4). By expanding the scale to wide fields of cysts, we generated morphogen diffusion gradients, controlling reporter gene expression. Together, these components provide a toolkit for engineering cell-cell communication networks in 3D cell culture.

Indexed as

AnimalsCell CommunicationCell Culture TechniquesCell EngineeringDogsHepatocyte Growth FactorMadin Darby Canine Kidney CellsSignal TransductionSynthetic BiologyHepatocyte Growth Factor

Identifiers

PMID24313393
PMCPMC4046804
OpenAlexW1976872126

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.