ArticlePloS one2013
Predicting plastid marker variation: can complete plastid genomes from closely related species help?
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed.
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- Comparative and phylogenetic analysis of Asparagus meioclados Levl. and Asparagus munitus Wang et S. C. Chen plastomes and utility of plastomes mutational hotspots.Scientific reports · 2023Article
- The First Complete Chloroplast Genome ofGenes · 2023Article
- Plastomes of limestone karst gesneriad genera Petrocodon and Primulina, and the comparative plastid phylogenomics of Gesneriaceae.Scientific reports · 2022Article
- Complete chloroplast genome of the medicinal plantPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
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- New Insights onPlants (Basel, Switzerland) · 2019Article
- Comparison of Four Complete Chloroplast Genomes of Medicinal and Ornamental Meconopsis Species: Genome Organization and Species Discrimination.Scientific reports · 2019Article
- Comparative analysis of complete chloroplast genome sequences of four major Amorphophallus species.Scientific reports · 2019Article
- Comparative chloroplast genomics and phylogenetics of nine Lindera species (Lauraceae).Scientific reports · 2018Article
- Method for the Identification of Taxon-SpecificFrontiers in plant science · 2018Article
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- An Efficient PCR-RFLP Method for the Rapid Identification of Korean Pyropia Species.Molecules (Basel, Switzerland) · 2017Article
- Article
- The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies.BMC evolutionary biology · 2017Article
- Complete chloroplast genome sequences of two endangered Phoebe (Lauraceae) species.Botanical studies · 2017Article
- Chloroplast Genomic Resource of Paris for Species Discrimination.Scientific reports · 2017Article
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2 authors.
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Abstract
Rapidly evolving non-coding plastid regions (NCPs) are currently widely used in evolutionary biology especially in plant systematic studies where NCPs have become one of the most commonly used tools in clarifying species relationships. Currently, the generally small amount of sequence variation provided by NCPs compared to nuclear regions makes plastid phylogeny reconstruction challenging at the species-level, especially so in species rich clades such as Solanum with c. 1,200 species. Previous studies have established that the set of most highly variable NCPs vary between major plant families, and here we explore whether this variation extends beyond family level to genera and major clades within genera. Using full plastome data, we identify the most highly variable plastid markers in the Potato clade of Solanum. We then compare sequence variation between the Potato and the closely related Morelloid clade. Results show that whilst a narrow set of NCPs show consistently high variation, levels of sequence variation in most NCPs differ greatly between the two closely related clades. The high variation detected between closely related groups implies that repeated screening studies will be needed for individual projects despite the potential availability of results from closely related taxa, and indicates a narrower applicability of family-specific screening studies than previously thought.
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