Evidence map›Paper›PMID 24312248›Full record

ArticlePloS one2013

Transcription profiling reveals potential mechanisms of dysbiosis in the oral microbiome of rhesus macaques with chronic untreated SIV infection.

Susan Ocon, Christina Murphy, Angeline T Dang, Sumathi Sankaran-Walters, Chin-Shang Li, Ross Tarara, Niku Borujerdpur, Satya Dandekar, Bruce J Paster, Michael D George

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
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  7. Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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  13. Article
  14. Microbiome in human immunodeficiency virus infection.Clinics in laboratory medicine · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Susan OconDepartment of Medical Microbiology and Immunology, University of California Davis, Davis, California, United States of America.
Christina Murphy
Angeline T Dang
Sumathi Sankaran-Walters
Chin-Shang Li
Ross Tarara
Niku Borujerdpur
Satya Dandekar
Bruce J Paster
Michael D George
University of California, Davis · USEmory University · USHarvard University · USUniversity of California, Los Angeles · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
UC Davis Clinical and Translational Science CenterUL1TR000002 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERGLUND, LARS F · 2012 to 2015
$12.2M
Building Interdisciplinary Research Careers in Womens Health at UC Davis - Administrative SupplementK12HD051958 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI LANE, NANCY E · 2005 to 2023
$9.6M
Innate immunity and alteration of the oral microbiome in SIV infected rhesus macaR21DE020025 · NIDCR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GEORGE, MICHAEL D. · 2010 to 2011
$484k
NCATS NIH HHS UL1 TR000002NICHD NIH HHS K12 HD051958NIDCR NIH HHS 1R21DE020025NIDCR NIH HHS R21 DE020025NIH HHS P51 OD011107
6 · The paper itself

Abstract

A majority of individuals infected with human immunodeficiency virus (HIV) have inadequate access to antiretroviral therapy and ultimately develop debilitating oral infections that often correlate with disease progression. Due to the impracticalities of conducting host-microbe systems-based studies in HIV infected patients, we have evaluated the potential of simian immunodeficiency virus (SIV) infected rhesus macaques to serve as a non-human primate model for oral manifestations of HIV disease. We present the first description of the rhesus macaque oral microbiota and show that a mixture of human commensal bacteria and "macaque versions" of human commensals colonize the tongue dorsum and dental plaque. Our findings indicate that SIV infection results in chronic activation of antiviral and inflammatory responses in the tongue mucosa that may collectively lead to repression of epithelial development and impact the microbiome. In addition, we show that dysbiosis of the lingual microbiome in SIV infection is characterized by outgrowth of Gemella morbillorum that may result from impaired macrophage function. Finally, we provide evidence that the increased capacity of opportunistic pathogens (e.g. E. coli) to colonize the microbiome is associated with reduced production of antimicrobial peptides.

Indexed as

DysbiosisGene Expression ProfilingMetagenomeMicrobiotaSimian Immunodeficiency VirusAnimalsCluster AnalysisGene Expression RegulationInterferon-gammaMacaca mulattaMaleMouthMouth MucosaPhylogenySimian Acquired Immunodeficiency SyndromeInterferon-gamma

Identifiers

PMID24312248
PMCPMC3843670
OpenAlexW2063954852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.