Evidence map›Paper›PMID 24312176›Full record

ArticlePloS one2013

Genetic association study between STK39 and CCDC62/HIP1R and Parkinson's disease.

Nan-Nan Li, Eng-King Tan, Xue-Li Chang, Xue-Ye Mao, Jin-Hong Zhang, Dong-Mei Zhao, Qiao Liao, Wen-Juan Yu, Rong Peng

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Nan-Nan LiDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Eng-King Tan
Xue-Li Chang
Xue-Ye Mao
Jin-Hong Zhang
Dong-Mei Zhao
Qiao Liao
Wen-Juan Yu
Rong Peng
Sichuan University · CNWest China Hospital of Sichuan University · CNNational Neuroscience Institute · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe first large-scale meta-analysis of published genome-wide association studies (GWAS) in Parkinson's disease (PD) identified 5 new genetic loci (ACMSD, STK39, MCCC1/LAMP3, SYT11, and CCDC62/HIP1R). Very recently, a large-scale replication and heterogeneity study also reported that STK39 and CCDC62/HIP1R increased risk of PD in Asian and Caucasian populations. However, their roles still remain unclear in a Han Chinese population from mainland China.

methodsWe examined genetic associations of STK39 rs2102808 and CCDC62/HIP1R rs12817488 with PD susceptibility in a Han Chinese population of 783 PD patients and 725 controls. We also performed further stratified analyses by the age of onset and accomplished in-depth clinical characteristics analyses between the different genotypes for each locus.

resultsNo significant differences were observed in the minor allele frequency (MAF) among cases and controls at the two loci (STK39 rs2102808: OR = 1.06, 95% CI = 0.91, 1.23, P = 0.467; CCDC62/HIP1R rs12817488: OR = 0.88, 95% CI = 0.76, 1.01, P = 0.072). Subgroup analyses by the age of onset also showed no significant differences among different subgroups of the two loci. In addition, minor allele carriers cannot be distinguished from non-carriers based on their clinical features at the two loci.

conclusionsWe are unable to demonstrate the association between STK39 and CCDC62/HIP1R and PD susceptibility in a Han Chinese population from mainland China. Additional replication studies in other populations and functional studies are warranted to better validate the role of the two new loci in PD risk.

Indexed as

Genetic Association StudiesAdaptor Proteins, Signal TransducingAdultAgedAged, 80 and overAllelesAsian PeopleCase-Control StudiesChinaFemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansMaleMicrofilament ProteinsAdaptor Proteins, Signal TransducingCCDC62 protein, humanHIP1R protein, humanMicrofilament ProteinsProtein Serine-Threonine KinasesSTK39 protein, humanTranscription FactorsVesicular Transport Proteins

Identifiers

PMID24312176
PMCPMC3842305
OpenAlexW2072056454

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.