Evidence map›Paper›PMID 24311789›Full record

ArticleThe Journal of biological chemistry2014

Structural basis for antibody recognition in the receptor-binding domains of toxins A and B from Clostridium difficile.

Tomohiko Murase, Luiz Eugenio, Melissa Schorr, Greg Hussack, Jamshid Tanha, Elena N Kitova, John S Klassen, Kenneth K S Ng

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Design of 8-mer Peptides that BlockbioRxiv : the preprint server for biology · 2023
    Article
  8. Structure-guided design of a potentFrontiers in microbiology · 2023
    Article
  9. Structure and conformational dynamics ofLife science alliance · 2022
    Article
  10. Review
  11. Neutralizing epitopes onFrontiers in immunology · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Structure of the full-length Clostridium difficile toxin B.Nature structural & molecular biology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Tomohiko MuraseFrom the Department of Biological Sciences and Alberta Glycomics Centre, University of Calgary, Calgary, Alberta T2N 1N4, Canada.
Luiz Eugenio
Melissa Schorr
Greg Hussack
Jamshid Tanha
Elena N Kitova
John S Klassen
Kenneth K S Ng
Alberta Glycomics Centre · CAUniversity of Calgary · CANational Research Council Canada · CAUniversity of Alberta · CAUniversity of Ottawa · CA

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
CIHRNCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393
6 · The paper itself

Abstract

Clostridium difficile infection is a serious and highly prevalent nosocomial disease in which the two large, Rho-glucosylating toxins TcdA and TcdB are the main virulence factors. We report for the first time crystal structures revealing how neutralizing and non-neutralizing single-domain antibodies (sdAbs) recognize the receptor-binding domains (RBDs) of TcdA and TcdB. Surprisingly, the complexes formed by two neutralizing antibodies recognizing TcdA do not show direct interference with the previously identified carbohydrate-binding sites, suggesting that neutralization of toxin activity may be mediated by mechanisms distinct from steric blockage of receptor binding. A camelid sdAb complex also reveals the molecular structure of the TcdB RBD for the first time, facilitating the crystallization of a strongly negatively charged protein fragment that has resisted previous attempts at crystallization and structure determination. Electrospray ionization mass spectrometry measurements confirm the stoichiometries of sdAbs observed in the crystal structures. These studies indicate how key epitopes in the RBDs from TcdA and TcdB are recognized by sdAbs, providing molecular insights into toxin structure and function and providing for the first time a basis for the design of highly specific toxin-specific therapeutic and diagnostic agents.

Indexed as

AnimalsAntibodies, BacterialBacterial ProteinsBacterial ToxinsClostridioides difficileCrystallography, X-RayEnterotoxinsEpitopesHumansProtein Structure, TertiarySingle-Chain AntibodiesStructure-Activity RelationshipAntibodies, BacterialBacterial ProteinsBacterial ToxinsEnterotoxinsEpitopesSingle-Chain AntibodiestcdA protein, Clostridium difficiletoxB protein, Clostridium difficileAntibodiesBacterial ToxinsMass Spectrometry (MS)Protein-Protein InteractionsX-ray Crystallography

Identifiers

PMID24311789
PMCPMC3900976
OpenAlexW2076683915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.