Evidence map›Paper›PMID 24307864›Full record

ArticleThe journal of physical chemistry. B2004

Length Dependent Helix-Coil Transition Kinetics of Nine Alanine-Based Peptides.

Ting Wang, Yongjin Zhu, Zelleka Getahun, Deguo Du, Cheng-Yen Huang, William F Degrado, Feng Gai

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Backbone Modification in a Protein Hydrophobic Core.Chemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Design of a Short Thermally Stable α-Helix Embedded in a Macrocycle.Chembiochem : a European journal of chemical biology · 2018
    Article
  10. Article
  11. Microscopic nucleation and propagation rates of an alanine-based α-helix.Physical chemistry chemical physics : PCCP · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Testing the diffusing boundary model for the helix-coil transition in peptides.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
  17. Diffusion models of protein folding.Physical chemistry chemical physics : PCCP · 2011
    Article
  18. Are Peptides Good Two-State Folders?Journal of chemical theory and computation · 2011
    Article
  19. Direct assessment of the α-helix nucleation time.The journal of physical chemistry. B · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ting Wang
Yongjin Zhu
Zelleka Getahun
Deguo Du
Cheng-Yen Huang
William F Degrado
Feng Gai

Funding

Spectroscopic Study of Protein Folding DynamicsR01GM065978 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GAI, FENG · 2002 to 2014
$3.9M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R01 GM065978
6 · The paper itself

Abstract

It is well-known that end caps and the peptide length can dramatically influence the thermodynamics of the helix-coil transition. However, their roles in determining the kinetics of the helix-coil transition have not been studied extensively and are less well understood. Kinetic Ising models and sequential kinetic models involving barrier crossing via diffusion all predict that the helix formation time depends monotonically on the peptide length with the relaxation time increasing with respect to increasing chain length. Here, we have studied the helix-coil transition kinetics of a series of Ala-based

Identifiers

PMID24307864
PMCPMC3845522

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.