Evidence map›Paper›PMID 24307583›Full record

ArticleJournal of virology2014

Two novel proteins of cyanophage Syn5 compose its unusual horn structure.

Desislava A Raytcheva, Cameron Haase-Pettingell, Jacqueline Piret, Jonathan A King

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Desislava A RaytchevaDepartment of Biology, Northeastern University, Boston, Massachusetts, USA.
Cameron Haase-Pettingell
Jacqueline Piret
Jonathan A King
Massachusetts Institute of Technology · USNortheastern University · US

Funding

Folding &Misfolding of Parallel Beta-Helix ProteinsR01GM017980 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 1985 to 2009
$4.9M
Structures of the portal vertex in dsDNA viruses and virus-infected cellsR01AI075208 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2009 to 2010
$1.0M
Structures of the portal vertex in dsDNA viruses and virus-infected cellsR56AI075208 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2011 to 2011
$507k
MECHANISM OF DNA REPLICATION IN XENOPUS EXTRACTSF32GM017980 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI WALTER, JOHANNES · 1995 to 1997
–
BACTERIOPHAGE ASSEMBLY AND ITS GENETIC CONTROLR37GM017980 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN A · 1988 to 1997
–
NIAID NIH HHS AI075208NIAID NIH HHS R01 AI075208NIAID NIH HHS R56 AI075208NIGMS NIH HHS F32 GM017980NIGMS NIH HHS GM17980NIGMS NIH HHS R01 GM017980
6 · The paper itself

Abstract

The marine cyanophage Syn5 can be propagated to a high titer in the laboratory on marine photosynthetic Synechococcus sp. strain WH8109. The purified particles carry a novel slender horn structure projecting from the vertex opposite the tail vertex. The genome of Syn5 includes a number of genes coding for novel proteins. Using immune-electron microscopy with gold-labeled antibodies, we show that two of these novel proteins, products of genes 53 and 54, are part of the horn structure. A third novel protein, the product of gene 58, is assembled onto the icosahedral capsid lattice. Characterization of radioactively labeled precursor procapsids by sucrose gradient centrifugation shows that there appear to be three classes of particles-procapsids, scaffold-deficient procapsids, and expanded capsids. These lack fully assembled horn appendages. The horn presumably assembles onto the virion just before or after DNA packaging. Antibodies raised to the recombinant novel Syn5 proteins did not interfere with phage infectivity, suggesting that the functions of these proteins are not directly involved in phage attachment or infection of the host WH8109. The horn structure may represent some adaption to the marine environment, whose function will require additional investigation.

Indexed as

Atlantic OceanBacteriophagesCapsid ProteinsCentrifugation, Density GradientImmunohistochemistryMicroscopy, ImmunoelectronSynechococcusCapsid Proteins

Identifiers

PMID24307583
PMCPMC3911526
OpenAlexW2120962526

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.