ArticleBMC genetics2013
Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes.
Article in BMC genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.
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5 citing papers in PubMed.
- A systems biology and QTL-based dissection of germination traits in Iranian wheat under normal and water-limited environments.Scientific reports · 2026Article
- Diversity of chemical composition and nutritional value in grain from selected winter wheat cultivars grown in south-western Poland.Scientific reports · 2024Article
- Genetic Variation for Protein Content and Yield-Related Traits in a Durum Population Derived From an Inter-Specific Cross Between Hexaploid and Tetraploid Wheat Cultivars.Frontiers in plant science · 2019Article
- Analysis of agronomic and domestication traits in a durum × cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Genome-wide association for grain morphology in synthetic hexaploid wheats using digital imaging analysis.BMC plant biology · 2014Article
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4 authors.
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Abstract
backgroundThe importance of wheat to the world economy, together with progresses in high-throughput next-generation DNA sequencing, have accelerated initiatives of genetic research for wheat improvement. The availability of high density linkage maps is crucial to identify genotype-phenotype associations, but also for anchoring BAC contigs to genetic maps, a strategy followed for sequencing the wheat genome.
resultsHere we report a genetic linkage map in a durum wheat segregating population and the study of mapped DArT markers. The linkage map consists of 126 gSSR, 31 EST-SSR and 351 DArT markers distributed in 24 linkage groups for a total length of 1,272 cM. Through bioinformatic approaches we have analysed 327 DArT clones to reveal their redundancy, syntenic and functional aspects. The DNA sequences of 174 DArT markers were assembled into a non-redundant set of 60 marker clusters. This explained the generation of clusters in very small chromosome regions across genomes. Of these DArT markers, 61 showed highly significant (Expectation < E-10) BLAST similarity to gene sequences in public databases of model species such as Brachypodium and rice. Based on sequence alignments, the analysis revealed a mosaic gene conservation, with 54 and 72 genes present in rice and Brachypodium species, respectively.
conclusionsIn the present manuscript we provide a detailed DArT markers characterization and the basis for future efforts in durum wheat map comparing.
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