Evidence map›Paper›PMID 24303041›Full record

ArticlePloS one2013

Identification of a novel zinc metalloprotease through a global analysis of Clostridium difficile extracellular proteins.

Valeria Cafardi, Massimiliano Biagini, Manuele Martinelli, Rosanna Leuzzi, Jeffrey T Rubino, Francesca Cantini, Nathalie Norais, Maria Scarselli, Davide Serruto, Meera Unnikrishnan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. CenIR, an essential BlaIR-family regulatory system inbioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Zinc Glycinate Alleviates Necrotic Enteritis Infection in Broiler Chickens.Animals : an open access journal from MDPI · 2025
    Article
  6. Immunization Strategies Against Clostridioides difficile.Advances in experimental medicine and biology · 2024
    Review
  7. Microbiology (Reading, England) · 2023
    Review
  8. Article
  9. Article
  10. Frontiers in genetics · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Cyclic-di-GMP regulation of virulence in bacterial pathogens.Wiley interdisciplinary reviews. RNA · 2018
    Review
  19. TargetingFrontiers in microbiology · 2018
    Review
  20. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Valeria CafardiNovartis Vaccines and Diagnostics, Siena, Italy.
Massimiliano Biagini
Manuele Martinelli
Rosanna Leuzzi
Jeffrey T Rubino
Francesca Cantini
Nathalie Norais
Maria Scarselli
Davide Serruto
Meera Unnikrishnan
Novartis (Italy) · ITNewron Pharmaceuticals (Italy) · ITInteruniversity Consortium for Magnetic Resonance · ITUniversity of Florence · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium difficile is a major cause of infectious diarrhea worldwide. Although the cell surface proteins are recognized to be important in clostridial pathogenesis, biological functions of only a few are known. Also, apart from the toxins, proteins exported by C. difficile into the extracellular milieu have been poorly studied. In order to identify novel extracellular factors of C. difficile, we analyzed bacterial culture supernatants prepared from clinical isolates, 630 and R20291, using liquid chromatography-tandem mass spectrometry. The majority of the proteins identified were non-canonical extracellular proteins. These could be largely classified into proteins associated to the cell wall (including CWPs and extracellular hydrolases), transporters and flagellar proteins. Seven unknown hypothetical proteins were also identified. One of these proteins, CD630_28300, shared sequence similarity with the anthrax lethal factor, a known zinc metallopeptidase. We demonstrated that CD630_28300 (named Zmp1) binds zinc and is able to cleave fibronectin and fibrinogen in vitro in a zinc-dependent manner. Using site-directed mutagenesis, we identified residues important in zinc binding and enzymatic activity. Furthermore, we demonstrated that Zmp1 destabilizes the fibronectin network produced by human fibroblasts. Thus, by analyzing the exoproteome of C. difficile, we identified a novel extracellular metalloprotease that may be important in key steps of clostridial pathogenesis.

Indexed as

ProteomicsAmino Acid SequenceBacterial ProteinsCatalysisClostridioides difficileEnzyme ActivationExtracellular SpaceFibrinogenFibroblastsFibronectinsHumansMetalloproteasesMolecular Sequence DataMutagenesis, Site-DirectedProtein TransportProteolysisBacterial ProteinsFibrinogenFibronectinsMetalloproteasesRecombinant ProteinsZinc

Identifiers

PMID24303041
PMCPMC3841139
OpenAlexW2006544197

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.