Evidence map›Paper›PMID 24303006›Full record

ArticlePloS one2013

Gene expression signature of normal cell-of-origin predicts ovarian tumor outcomes.

Melissa A Merritt, Stefan Bentink, Matthew Schwede, Marcin P Iwanicki, John Quackenbush, Terri Woo, Elin S Agoston, Ferenc Reinhardt, Christopher P Crum, Ross S Berkowitz and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Melissa A MerrittDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America ; Division of Gynecologic Oncology, Department of Obstetrics and Gynecology, Brigham and Women's Hospital, Boston, Massachusetts, United States of America ; Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, United States of America.
Stefan Bentink
Matthew Schwede
Marcin P Iwanicki
John Quackenbush
Terri Woo
Elin S Agoston
Ferenc Reinhardt
Christopher P Crum
Ross S Berkowitz
Samuel C Mok
Abigail E Witt
Michelle A Jones
Bin Wang
Tan A Ince
Brigham and Women's Hospital · USDana-Farber Cancer Institute · USUniversity of Miami · USHarvard University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Novel Serum, Plasma, and Urine Biomarkers of Ovarian CanP50CA105009 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRAMER, DANIEL WILLIAM · 2004 to 2010
$13.3M
Nutritional Epidemiology of Cancer Education and Career Development ProgramR25CA098566 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI STAMPFER, MEIR · 2003 to 2013
$4.5M
Epigenomic Mapping in Human Tumor Stem CellsR01CA146445 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI INCE, TAN A., LEE, TONG IHN · 2009 to 2013
$3.1M
Prognostic markers for ovarian cancerR01CA133057 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MOK, SAMUEL C · 2009 to 2013
$1.5M
p53 signatures and pelvic serous carcinomaR21CA124688 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRUM, CHRISTOPHER PAUL · 2007 to 2009
$420k
NCI NIH HHS 5P50 CA105009-05NCI NIH HHS P50 CA105009NCI NIH HHS R01 CA133057NCI NIH HHS R01 CA146445NCI NIH HHS R01-CA146445-01NCI NIH HHS R21 CA124688NCI NIH HHS R21 CA124688-01A1NCI NIH HHS R25 CA098566NCI NIH HHS R25CA098566
6 · The paper itself

Abstract

The potential role of the cell-of-origin in determining the tumor phenotype has been raised, but not adequately examined. We hypothesized that distinct cells-of-origin may play a role in determining ovarian tumor phenotype and outcome. Here we describe a new cell culture medium for in vitro culture of paired normal human ovarian (OV) and fallopian tube (FT) epithelial cells from donors without cancer. While these cells have been cultured individually for short periods of time, to our knowledge this is the first long-term culture of both cell types from the same donors. Through analysis of the gene expression profiles of the cultured OV/FT cells we identified a normal cell-of-origin gene signature that classified primary ovarian cancers into OV-like and FT-like subgroups; this classification correlated with significant differences in clinical outcomes. The identification of a prognostically significant gene expression signature derived solely from normal untransformed cells is consistent with the hypothesis that the normal cell-of-origin may be a source of ovarian tumor heterogeneity and the associated differences in tumor outcome.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsCell Line, TransformedDisease Models, AnimalEpithelial CellsFallopian TubesFemaleHeterograftsHumansMiceOvarian NeoplasmsOvaryPrimary Cell CulturePrognosis

Identifiers

PMID24303006
PMCPMC3841174
OpenAlexW2135780800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.