Evidence map›Paper›PMID 24302724›Full record

ArticleThe Journal of biological chemistry2014

Non-growing Rhodopseudomonas palustris increases the hydrogen gas yield from acetate by shifting from the glyoxylate shunt to the tricarboxylic acid cycle.

James B McKinlay, Yasuhiro Oda, Martin Rühl, Amanda L Posto, Uwe Sauer, Caroline S Harwood

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 118 citations in OpenAlex.

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  4. Purple non-sulfur bacteria for biotechnological applications.Journal of industrial microbiology & biotechnology · 2024
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  5. Overexpression of RuBisCO form I and II genes inApplied and environmental microbiology · 2024
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  7. A purine salvage bottleneck leads to bacterial adenine cross-feeding.bioRxiv : the preprint server for biology · 2023
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  10. Review
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  12. Article
  13. Photosynthetic biohybrid coculture for tandem and tunable COProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Heterologous phasin expression inMetabolic engineering communications · 2022
    Article
  16. Characteristics and Application ofFrontiers in bioengineering and biotechnology · 2022
    Review
  17. Article
  18. Extracellular Metabolism Sets the Table for Microbial Cross-Feeding.Microbiology and molecular biology reviews : MMBR · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

James B McKinlayFrom the Department of Biology, Indiana University, Bloomington, Indiana 47405.
Yasuhiro Oda
Martin Rühl
Amanda L Posto
Uwe Sauer
Caroline S Harwood
ETH Zurich · CHUniversity of Washington · USIndiana University Bloomington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When starved for nitrogen, non-growing cells of the photosynthetic bacterium Rhodopseudomonas palustris continue to metabolize acetate and produce H2, an important industrial chemical and potential biofuel. The enzyme nitrogenase catalyzes H2 formation. The highest H2 yields are obtained when cells are deprived of N2 and thus use available electrons to synthesize H2 as the exclusive product of nitrogenase. To understand how R. palustris responds metabolically to increase H2 yields when it is starved for N2, and thus not growing, we tracked changes in biomass composition and global transcript levels. In addition to a 3.5-fold higher H2 yield by non-growing cells we also observed an accumulation of polyhydroxybutyrate to over 30% of the dry cell weight. The transcriptome of R. palustris showed down-regulation of biosynthetic processes and up-regulation of nitrogen scavenging mechanisms in response to N2 starvation but gene expression changes did not point to metabolic activities that could generate the reductant necessary to explain the high H2 yield. We therefore tracked (13)C-labeled acetate through central metabolic pathways. We found that non-growing cells shifted their metabolism to use the tricarboxylic acid cycle to metabolize acetate in contrast to growing cells, which used the glyoxylate cycle exclusively. This shift enabled cells to more fully oxidize acetate, providing the necessary reducing power to explain the high H2 yield.

Indexed as

AcetatesCitric Acid CycleGlyoxylatesHydrogenHydroxybutyratesNitrogenOxidation-ReductionPolyestersPolyhydroxybutyratesRhodopseudomonasTranscriptomeAcetatesGlyoxylatesglyoxylic acidHydrogenHydroxybutyratesNitrogenpoly-beta-hydroxybutyratePolyestersPolyhydroxybutyratesBacterial MetabolismBacterial StarvationBiofuelHydrogen GasMetabolic EngineeringMetabolic Flux AnalysisMetabolic RegulationMetabolic TracersNitrogenaseTranscriptomics

Identifiers

PMID24302724
PMCPMC3900946
OpenAlexW2063028509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.