Evidence map›Paper›PMID 24302573›Full record

ArticleeLife2013

Hdac6 regulates Tip60-p400 function in stem cells.

Poshen B Chen, Jui-Hung Hung, Taylor L Hickman, Andrew H Coles, James F Carey, Zhiping Weng, Feixia Chu, Thomas G Fazzio

Open access · goldAbstract read
In one paragraph

Article in eLife, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. Article
  8. Chromatin Modifier EP400 Regulates Oocyte Quality and Zygotic Genome Activation in Mice.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  9. Article
  10. Article
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  16. Article
  17. Transcriptional Control of Apical-Basal Polarity Regulators.International journal of molecular sciences · 2021
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Poshen B ChenProgram in Gene Function and Expression, University of Massachusetts Medical School, Worcester, United States.
Jui-Hung Hung
Taylor L Hickman
Andrew H Coles
James F Carey
Zhiping Weng
Feixia Chu
Thomas G Fazzio
University of Massachusetts Chan Medical School · USUniversity of New Hampshire · US

Funding

Roles of Chromatin Regulation in Embryonic Stem Cell Self-RenewalR01HD072122 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Thomas G Fazzio · 2012 to 2026
$5.9M
NICHD NIH HHS HD072122NICHD NIH HHS R01 HD072122
6 · The paper itself

Abstract

In embryonic stem cells (ESCs), the Tip60 histone acetyltransferase activates genes required for proliferation and silences genes that promote differentiation. Here we show that the class II histone deacetylase Hdac6 co-purifies with Tip60-p400 complex from ESCs. Hdac6 is necessary for regulation of most Tip60-p400 target genes, particularly those repressed by the complex. Unlike differentiated cells, where Hdac6 is mainly cytoplasmic, Hdac6 is largely nuclear in ESCs, neural stem cells (NSCs), and some cancer cell lines, and interacts with Tip60-p400 in each. Hdac6 localizes to promoters bound by Tip60-p400 in ESCs, binding downstream of transcription start sites. Surprisingly, Hdac6 does not appear to deacetylate histones, but rather is required for Tip60-p400 binding to many of its target genes. Finally, we find that, like canonical subunits of Tip60-p400, Hdac6 is necessary for robust ESC differentiation. These data suggest that Hdac6 plays a major role in the modulation of Tip60-p400 function in stem cells. DOI: http://dx.doi.org/10.7554/eLife.01557.001.

Indexed as

AnimalsDimerizationEmbryonic Stem CellsHistone AcetyltransferasesHistone Deacetylase 6Histone DeacetylasesHumansLysine Acetyltransferase 5MiceHDAC6 protein, humanHistone AcetyltransferasesHistone Deacetylase 6Histone DeacetylasesKAT5 protein, humanLysine Acetyltransferase 5chromatinHdac6Kat5stem cellsTip60

Identifiers

PMID24302573
PMCPMC3843111
OpenAlexW2071627801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.