Evidence map›Paper›PMID 24301521›Full record

ArticleMolecular bioSystems2014

A FRET-based approach for identification of proteasome catalytic subunit composition.

Ji Eun Park, Ying Wu, Kimberly Cornish Carmony, Zachary Miller, Lalit Kumar Sharma, Do-Min Lee, Doo-Young Kim, Wooin Lee, Kyung-Bo Kim

Abstract read
In one paragraph

Article in Molecular bioSystems, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ji Eun ParkDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, Kentucky, USA 40536-0596. kbkim2@uky.edu.
Ying Wu
Kimberly Cornish Carmony
Zachary Miller
Lalit Kumar Sharma
Do-Min Lee
Doo-Young Kim
Wooin Lee
Kyung-Bo Kim

Funding

Chemical Probes of Immunoproteasome Function in CancerR01CA128903 · NCI · UNIVERSITY OF KENTUCKY · PI KIM, KYUNG BO · 2010 to 2014
$1.5M
Targeting the immunoproteasome as a novel colorectal cancer therapyR15CA156601 · NCI · UNIVERSITY OF KENTUCKY · PI LEE, WOOIN · 2011 to 2011
$446k
NCI NIH HHS R01 CA128903NCI NIH HHS R15 CA156601
6 · The paper itself

Abstract

Mammalian cells have two main types of proteasomes, the constitutive proteasome and the immunoproteasome, each containing a distinct set of three catalytic subunits. Recently, additional proteasome subtypes containing a non-standard mixture of catalytic subunits have gained increasing attention, especially due to their presence in cancer settings. However, practical methods for identifying proteasome subtypes have been lacking. Here, we report the development of the first fluorescence resonance energy transfer (FRET)-based strategy that can be utilized to identify different proteasome subtypes present within cells. We have developed FRET donor- and acceptor-probes that are based on previously reported peptide epoxyketones and selectively target individual proteasome catalytic subunits. Using the purified proteasome and cancer cell lysates, we demonstrate the feasibility of a FRET-based approach for determining the catalytic subunit composition of individual 20S proteasome subtypes. Ultimately, this approach may be utilized to study the functions of individual proteasome subtypes in cells.

Indexed as

Catalytic DomainFluorescence Resonance Energy TransferElectrophoresis, Gel, Two-DimensionalFluorescent DyesProteasome Endopeptidase ComplexProtein ConformationProtein Structure, SecondaryProtein Structure, TertiaryFluorescent DyesProteasome Endopeptidase Complex

Identifiers

PMID24301521
PMCPMC3898201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.