Evidence map›Paper›PMID 24300554›Full record

ArticleJournal of structural biology2014

Multi-resolution correlative focused ion beam scanning electron microscopy: applications to cell biology.

Kedar Narayan, Cindy M Danielson, Ken Lagarec, Bradley C Lowekamp, Phil Coffman, Alexandre Laquerre, Michael W Phaneuf, Thomas J Hope, Sriram Subramaniam

Abstract read
In one paragraph

Article in Journal of structural biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
14.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. Volume electron microscopy.Nature reviews. Methods primers · 2022
    Article
  11. Embedding of HIV Egress within Cortical F-Actin.Pathogens (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Primary cilia biogenesis and associated retinal ciliopathies.Seminars in cell & developmental biology · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Kedar NarayanLaboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Cindy M DanielsonDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Ken LagarecFibics Incorporated, 556 Booth St., Suite 200, Ottawa, Ontario K1A 0G1, Canada.
Bradley C LowekampNational Library of Medicine, NIH, Bethesda, MD 20892, USA.
Phil CoffmanLaboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Alexandre LaquerreFibics Incorporated, 556 Booth St., Suite 200, Ottawa, Ontario K1A 0G1, Canada.
Michael W PhaneufFibics Incorporated, 556 Booth St., Suite 200, Ottawa, Ontario K1A 0G1, Canada.
Thomas J HopeDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Sriram SubramaniamLaboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA. Electronic address: ss1@nih.gov.
Fibics (Canada) · CANorthwestern University · USCenter for Cancer Research · USNational Cancer Institute · USNational Institutes of Health · USUnited States National Library of Medicine · US

Funding

Technology Development for 3D Electron MicroscopyZIABC010826 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 2009 to 2019
$9.1M
Imaging cellular assemblies with three-dimensional electron microscopyZIABC010278 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 2009 to 2019
$8.0M
HIV neutralization and mechanisms of cellular entryZIABC010825 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 2009 to 2019
$8.0M
Imaging cellular assemblies with three-dimensional EMZ01BC010278 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SUBRAMANIAM, SRIRAM · 1999 to 2008
$1.1M
Intramural NIH HHS Z01 BC010278Intramural NIH HHS ZIA BC010826
6 · The paper itself

Abstract

Efficient correlative imaging of small targets within large fields is a central problem in cell biology. Here, we demonstrate a series of technical advances in focused ion beam scanning electron microscopy (FIB-SEM) to address this issue. We report increases in the speed, robustness and automation of the process, and achieve consistent z slice thickness of ∼3 nm. We introduce "keyframe imaging" as a new approach to simultaneously image large fields of view and obtain high-resolution 3D images of targeted sub-volumes. We demonstrate application of these advances to image post-fusion cytoplasmic intermediates of the HIV core. Using fluorescently labeled cell membranes, proteins and HIV cores, we first produce a "target map" of an HIV infected cell by fluorescence microscopy. We then generate a correlated 3D EM volume of the entire cell as well as high-resolution 3D images of individual HIV cores, achieving correlative imaging across a volume scale of 10(9) in a single automated experimental run.

Indexed as

Cell BiologyCell LineHumansMicroscopy, Electron, ScanningMicroscopy, Fluorescence3D imaging of bacteriaCorrelative microscopyFIB-SEMHIV-1 coreIon abrasion scanning electron microscopyThree-dimensional electron microscopyTomography

Identifiers

PMID24300554
PMCPMC3943650
OpenAlexW2072560959

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.