Evidence map›Paper›PMID 24298298›Full record

ArticlePloS one2013

Developmental expression of the Nfe2-related factor (Nrf) transcription factor family in the zebrafish, Danio rerio.

Larissa M Williams, Alicia R Timme-Laragy, Jared V Goldstone, Andrew G McArthur, John J Stegeman, Roxanna M Smolowitz, Mark E Hahn

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. UVB Irradiation Induced Cell Damage and Early Onset ofAnimals : an open access journal from MDPI · 2020
    Article
  13. Article
  14. Review
  15. Developmental Regulation of Nuclear Factor Erythroid-2 Related Factors (nrfs) by AHR1b in Zebrafish (Danio rerio).Toxicological sciences : an official journal of the Society of Toxicology · 2019
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Larissa M WilliamsBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America ; Biology Department, Bates College, Lewiston, Maine, United States of America.
Alicia R Timme-Laragy
Jared V Goldstone
Andrew G McArthur
John J Stegeman
Roxanna M Smolowitz
Mark E Hahn
Woods Hole Oceanographic Institution · USBates College · USRoger Williams University · US

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LEVY, JONATHAN I · 1995 to 2019
$46.1M
CYP Genes and the Generation of Oxidative StressR01ES015912 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2007 to 2011
$3.1M
Mechanisms of Embryo Response to Oxidative StressR01ES016366 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 2009 to 2013
$1.9M
Differential Sensitivity to Oxidative Stress during Embryonic DevelopmentF32ES017585 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI TIMME-LARAGY, ALICIA R · 2009 to 2011
$154k
Transcription Factor Cross-Talk in Developmental ToxicityF32ES019832 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI WILLIAMS, LARISSA · 2011 to 2012
$90k
NIEHS NIH HHS F32 ES017585NIEHS NIH HHS F32ES017585NIEHS NIH HHS F32 ES019832NIEHS NIH HHS F32ES019832NIEHS NIH HHS P42 ES007381NIEHS NIH HHS R01 ES015912NIEHS NIH HHS R01ES015912NIEHS NIH HHS R01 ES016366NIEHS NIH HHS R01ES016366
6 · The paper itself

Abstract

Transcription factors in the CNC-bZIP family (NFE2, NRF1, NRF2 and NRF3) regulate genes with a wide range of functions in response to both physiological and exogenous signals, including those indicating changes in cellular redox status. Given their role in helping to maintain cellular homeostasis, it is imperative to understand the expression, regulation, and function of CNC-bZIP genes during embryonic development. We explored the expression and function of six nrf genes (nfe2, nrf1a, nrf1b, nrf2a, nrf2b, and nrf3) using zebrafish embryos as a model system. Analysis by microarray and quantitative RT-PCR showed that genes in the nrf family were expressed throughout development from oocytes to larvae. The spatial expression of nrf3 suggested a role in regulating the development of the brain, brachia and pectoral fins. Knock-down by morpholino anti-sense oligonucleotides suggested that none of the genes were necessary for embryonic viability, but nfe2 was required for proper cellular organization in the pneumatic duct and subsequent swim bladder function, as well as for proper formation of the otic vesicles. nrf genes were induced by the oxidant tert-butylhydroperoxide, and some of this response was regulated through family members Nrf2a and Nrf2b. Our results provide a foundation for understanding the role of nrf genes in normal development and in regulating the response to oxidative stress in vertebrate embryos.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsEye ProteinsGene Knockdown TechniquesNF-E2-Related Factor 2NF-E2 Transcription Factor, p45 SubunitNuclear Respiratory Factor 1Oxidative StressTranscription FactorsZebrafishZebrafish ProteinsEye Proteinsnfe2l2a protein, zebrafishnfe2l3 protein, zebrafishnfe2 protein, zebrafishNF-E2-Related Factor 2NF-E2 Transcription Factor, p45 SubunitNRF1 protein, zebrafishNuclear Respiratory Factor 1Transcription FactorsZebrafish Proteins

Identifiers

PMID24298298
PMCPMC3840143
OpenAlexW2114681936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.