Evidence map›Paper›PMID 24297920›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae.

Emily B Kramer, Anita K Hopper

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Review
  2. Article
  3. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  4. Article
  5. Article
  6. Structural basis of tRNA recognition by the mNature structural & molecular biology · 2024
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Emily B KramerDepartment of Molecular Genetics, Center for RNA Biology, The Ohio State University, Columbus, OH 43210.
Anita K Hopper

Funding

YEAST GENES IN RNA PROCESSING &NUCLEUS/CYTOSOL EXCHANGER01GM027930 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HOPPER, ANITA K · 1985 to 2014
$4.6M
Postdoctoral Training in Cancer GeneticsT32CA106196 · NCI · OHIO STATE UNIVERSITY · PI DE LA CHAPELLE, ALBERT · 2004 to 2013
$3.6M
NCI NIH HHS CA106196NCI NIH HHS T32 CA106196NIGMS NIH HHS GM-27930NIGMS NIH HHS R01 GM027930
6 · The paper itself

Abstract

In eukaryotes, transfer RNAs (tRNAs) are transcribed in the nucleus yet function in the cytoplasm; thus, tRNA movement within the cell was believed to be unidirectional--from the nucleus to the cytoplasm. It is now known that mature tRNAs also move in a retrograde direction from the cytoplasm to the nucleus via retrograde tRNA nuclear import, a process that is conserved from yeast to vertebrates. The biological significance of this tRNA nuclear import is not entirely clear. We hypothesized that retrograde tRNA nuclear import might function in proofreading tRNAs to ensure that only proper tRNAs reside in the cytoplasm and interact with the translational machinery. Here we identify two major types of aberrant tRNAs in yeast: a 5', 3' end-extended, spliced tRNA and hypomodified tRNAs. We show that both types of aberrant tRNAs accumulate in mutant cells that are defective in tRNA nuclear traffic, suggesting that they are normally imported into the nucleus and are repaired or degraded. The retrograde pathway functions in parallel with the cytoplasmic rapid tRNA decay pathway previously demonstrated to monitor tRNA quality, and cells are not viable if they lack both pathways. Our data support the hypothesis that the retrograde process provides a newly discovered level of tRNA quality control as a pathway that monitors both end processing of pre-tRNAs and the modification state of mature tRNAs.

Indexed as

Active Transport, Cell NucleusBlotting, NorthernCell NucleusNucleocytoplasmic Transport ProteinsOligonucleotidesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNucleocytoplasmic Transport ProteinsOligonucleotidesRNA, TransferSaccharomyces cerevisiae ProteinsLos1Mtr10quality control pathwaystRNA processing errorstRNA retrograde pathway

Identifiers

PMID24297920
PMCPMC3876269

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.