Evidence map›Paper›PMID 24297900›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Freek J Vonk, Nicholas R Casewell, Christiaan V Henkel, Alysha M Heimberg, Hans J Jansen, Ryan J R McCleary, Harald M E Kerkkamp, Rutger A Vos, Isabel Guerreiro, Juan J Calvete and 26 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed
39.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed, 491 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Toxins in disguise: Neuropeptide mimicry across animal venoms.General and comparative endocrinology · 2026
    Review
  5. Review
  6. Genome of venomous caterpillarProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Review
  9. Duplication of a conserved mitochondrial enzyme gene arms parasitoid wasps with venom cytotoxicity and oogenesis regulation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
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160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 17 institutions in 9 countries.

Freek J VonkNaturalis Biodiversity Center, 2333 CR, Leiden, The Netherlands.
Nicholas R Casewell
Christiaan V Henkel
Alysha M Heimberg
Hans J Jansen
Ryan J R McCleary
Harald M E Kerkkamp
Rutger A Vos
Isabel Guerreiro
Juan J Calvete
Wolfgang Wüster
Anthony E Woods
Jessica M Logan
Robert A Harrison
Todd A Castoe
A P Jason de Koning
David D Pollock
Mark Yandell
Diego Calderon
Camila Renjifo
Rachel B Currier
David Salgado
Davinia Pla
Libia Sanz
Asad S Hyder
José M C Ribeiro
Jan W Arntzen
Guido E E J M van den Thillart
Marten Boetzer
Walter Pirovano
Ron P Dirks
Herman P Spaink
Denis Duboule
Edwina McGlinn
R Manjunatha Kini
Michael K Richardson
ZF Screens (Netherlands) · NLLiverpool School of Tropical Medicine · GBLeiden University · NLMonash University · AUNaturalis Biodiversity Center · NLBioclear Earth (Netherlands) · NLInstituto de Biomedicina de Valencia · ESNational University of Singapore · SGUniversity of Geneva · CHUniversity of South Australia · AUUniversity of Utah · USAlberta Children's Hospital · CABangor University · GBConsejo Superior de Investigaciones Científicas · ESNational Institutes of Health · USThe University of Texas at Arlington · USUniversity of Colorado Denver · US

Funding

Genome-wide mutation models to decipher functionR01GM097251 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI POLLOCK, DAVID D · 2012 to 2015
$1.2M
Biotechnology and Biological Sciences Research CouncilNIGMS NIH HHS R01 GM097251
6 · The paper itself

Abstract

Snakes are limbless predators, and many species use venom to help overpower relatively large, agile prey. Snake venoms are complex protein mixtures encoded by several multilocus gene families that function synergistically to cause incapacitation. To examine venom evolution, we sequenced and interrogated the genome of a venomous snake, the king cobra (Ophiophagus hannah), and compared it, together with our unique transcriptome, microRNA, and proteome datasets from this species, with data from other vertebrates. In contrast to the platypus, the only other venomous vertebrate with a sequenced genome, we find that snake toxin genes evolve through several distinct co-option mechanisms and exhibit surprisingly variable levels of gene duplication and directional selection that correlate with their functional importance in prey capture. The enigmatic accessory venom gland shows a very different pattern of toxin gene expression from the main venom gland and seems to have recruited toxin-like lectin genes repeatedly for new nontoxic functions. In addition, tissue-specific microRNA analyses suggested the co-option of core genetic regulatory components of the venom secretory system from a pancreatic origin. Although the king cobra is limbless, we recovered coding sequences for all Hox genes involved in amniote limb development, with the exception of Hoxd12. Our results provide a unique view of the origin and evolution of snake venom and reveal multiple genome-level adaptive responses to natural selection in this complex biological weapon system. More generally, they provide insight into mechanisms of protein evolution under strong selection.

Indexed as

ElapidaeElapid VenomsEvolution, MolecularAdaptation, BiologicalAnimalsExocrine GlandsGenomeMicroRNAsTranscriptomeElapid VenomsMicroRNAsgenomicsphylogeneticsserpentes

Identifiers

PMID24297900
PMCPMC3870661
OpenAlexW2150146437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.