ArticleScientific reports2013
SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.
Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.
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Who cites it
61 citing papers in PubMed, 1 synthesis or guideline pooled it, 145 citations in OpenAlex.
- Antisense Transcription in Plants: A Systematic Review and an Update on cis-NATs of Sugarcane.International journal of molecular sciences · 2022Pooled it
- Balancing gain and diversity: Optimal contribution selection for sustainable genetic improvement in sugarcane.The plant genome · 2026Review
- From family trials to genomic mate allocation: statistical and genomic strategies to accelerate sugarcane genetic improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Benchmarking long-read variant calling in diploid and polyploid genomes: insights from human and plants.BMC genomics · 2026Article
- Genetic linkage mapping in Megathyrsus maximus (Jacq.) with multiple dosage markers.G3 (Bethesda, Md.) · 2025Article
- Genetic variation and preliminary marker-trait associations for cane quality traits in a diverse world collection of sugarcane (Frontiers in plant science · 2025Article
- Identifying candidate genes for sugar accumulation in sugarcane: an integrative approach.BMC genomics · 2024Article
- Machine learning for genomic and pedigree prediction in sugarcane.The plant genome · 2024Article
- polyGBLUP: a modified genomic best linear unbiased prediction improved the genomic prediction efficiency for autopolyploid species.Briefings in bioinformatics · 2024Article
- Sugarcane breeding: a fantastic past and promising future driven by technology and methods.Frontiers in plant science · 2024Article
- Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.The plant genome · 2023Article
- Integrated Approach in Genomic Selection to Accelerate Genetic Gain in Sugarcane.Plants (Basel, Switzerland) · 2022Review
- Allele expression biases in mixed-ploid sugarcane accessions.Scientific reports · 2022Article
- Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane.Scientific reports · 2022Article
- Genomic prediction with allele dosage information in highly polyploid species.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- An autopolyploid-suitable polyBSA-seq strategy for screening candidate genetic markers linked to leaf blight resistance in sugarcane.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Review
- Genome-wide approaches for the identification of markers and genes associated with sugarcane yellow leaf virus resistance.Scientific reports · 2021Article
- Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
1 more citing papers are in PubMed but not listed here.
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Authors and funding
26 authors at 7 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Many plant species of great economic value (e.g., potato, wheat, cotton, and sugarcane) are polyploids. Despite the essential roles of autopolyploid plants in human activities, our genetic understanding of these species is still poor. Recent progress in instrumentation and biochemical manipulation has led to the accumulation of an incredible amount of genomic data. In this study, we demonstrate for the first time a successful genetic analysis in a highly polyploid genome (sugarcane) by the quantitative analysis of single-nucleotide polymorphism (SNP) allelic dosage and the application of a new data analysis framework. This study provides a better understanding of autopolyploid genomic structure and is a sound basis for genetic studies. The proposed methods can be employed to analyse the genome of any autopolyploid and will permit the future development of high-quality genetic maps to assist in the assembly of reference genome sequences for polyploid species.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.