Evidence map›Paper›PMID 24291792›Full record

ArticleNature2013

Mechanism of farnesylated CAAX protein processing by the intramembrane protease Rce1.

Ioannis Manolaridis, Kiran Kulkarni, Roger B Dodd, Satoshi Ogasawara, Ziguo Zhang, Ganka Bineva, Nicola O' Reilly, Sarah J Hanrahan, Andrew J Thompson, Nora Cronin and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 168 citations in OpenAlex.

  1. Review
  2. Structural insights into human signal peptide peptidase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. SpbR controls lipoteichoic acid length by directly inhibiting signal peptidase SpsB inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Journal of bacteriology · 2024
    Article
  10. Unveiling a CAAX Protease-Like Protein Involved in Didemnin Drug Maturation and Secretion.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Ioannis Manolaridis *Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Kiran Kulkarni *Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Roger B DoddInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Satoshi OgasawaraDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Yoshida-konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan.
Ziguo ZhangInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Ganka BinevaCancer Research UK London Research Institute, 44 Lincoln's Inn Fields, London, WC2A 3LY, UK.
Nicola O' ReillyCancer Research UK London Research Institute, 44 Lincoln's Inn Fields, London, WC2A 3LY, UK.
Sarah J HanrahanInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Andrew J ThompsonInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Nora CroninInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
So IwataDepartment of Cell Biology, Graduate School of Medicine, Kyoto University, Yoshida-konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan.
David BarfordInstitute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.
Institute of Cancer Research · GBCancer Research UK · GBImperial College London · GBKyoto University · JPUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G023425/1Cancer Research UK 14109Cancer Research UK A2560Cancer Research UK A7403Cancer Research UK A8022Medical Research Council MC_UP_1201/6Wellcome Trust 100140
6 · The paper itself

Abstract

CAAX proteins have essential roles in multiple signalling pathways, controlling processes such as proliferation, differentiation and carcinogenesis. The ∼120 mammalian CAAX proteins function at cellular membranes and include the Ras superfamily of small GTPases, nuclear lamins, the γ-subunit of heterotrimeric GTPases, and several protein kinases and phosphatases. The proper localization of CAAX proteins to cell membranes is orchestrated by a series of post-translational modifications of the carboxy-terminal CAAX motifs (where C is cysteine, A is an aliphatic amino acid and X is any amino acid). These reactions involve prenylation of the cysteine residue, cleavage at the AAX tripeptide and methylation of the carboxyl-prenylated cysteine residue. The major CAAX protease activity is mediated by Rce1 (Ras and a-factor converting enzyme 1), an intramembrane protease (IMP) of the endoplasmic reticulum. Information on the architecture and proteolytic mechanism of Rce1 has been lacking. Here we report the crystal structure of a Methanococcus maripaludis homologue of Rce1, whose endopeptidase specificity for farnesylated peptides mimics that of eukaryotic Rce1. Its structure, comprising eight transmembrane α-helices, and catalytic site are distinct from those of other IMPs. The catalytic residues are located ∼10 Å into the membrane and are exposed to the cytoplasm and membrane through a conical cavity that accommodates the prenylated CAAX substrate. We propose that the farnesyl lipid binds to a site at the opening of two transmembrane α-helices, which results in the scissile bond being positioned adjacent to a glutamate-activated nucleophilic water molecule. This study suggests that Rce1 is the founding member of a novel IMP family, the glutamate IMPs.

Indexed as

BiocatalysisPrenylationAmino Acid MotifsAmino Acid SequenceAnimalsArchaeal ProteinsConserved SequenceCrystallography, X-RayCysteineDNA-Binding ProteinsEndopeptidasesEndoplasmic ReticulumEscherichia coli ProteinsGlutamic AcidHumansMembrane ProteinsArchaeal ProteinsCysteineDNA-Binding ProteinsEndopeptidasesEscherichia coli ProteinsGlpG protein, E coliGlutamic AcidMembrane ProteinsMetalloendopeptidasesPeptide HydrolasesProto-Oncogene Proteins p21(ras)RCE1 protein, humanZMPSTE24 protein, human

Identifiers

PMID24291792
PMCPMC3864837
OpenAlexW2082621592

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.