Evidence map›Paper›PMID 24290284›Full record

ArticleThe Journal of allergy and clinical immunology2014

A systematic analysis of recombination activity and genotype-phenotype correlation in human recombination-activating gene 1 deficiency.

Yu Nee Lee, Francesco Frugoni, Kerry Dobbs, Jolan E Walter, Silvia Giliani, Andrew R Gennery, Waleed Al-Herz, Elie Haddad, Francoise LeDeist, Jack H Bleesing and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 144 citations in OpenAlex.

  1. Trial
  2. Low Exposure Busulfan Conditioning to Achieve Sufficient Multilineage Chimerism in Patients with Severe Combined Immunodeficiency.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2019
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 19 institutions in 8 countries.

Yu Nee LeeDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Francesco FrugoniDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Kerry DobbsDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Jolan E WalterDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass; Division of Pediatric Allergy/Immunology, Massachusetts General Hospital for Children, Boston, Mass.
Silvia GilianiA. Nocivelli Institute for Molecular Medicine, Pediatric Clinic, University of Brescia, and the Section of Genetics, Department of Pathology Spedali Civili, Brescia, Italy.
Andrew R GenneryDepartment of Paediatric Immunology, Newcastle Upon Tyne Hospital, NHS Foundation Trust, United Kingdom and Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Waleed Al-HerzDepartment of Pediatrics, Faculty of Medicine, Kuwait University, Kuwait City, Kuwait.
Elie HaddadDepartment of Pediatrics and Department of Microbiology, Infectiology and Immunology, University of Montreal, CHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Francoise LeDeistDepartment of Pediatrics and Department of Microbiology, Infectiology and Immunology, University of Montreal, CHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Jack H BleesingDivision of Hematology/Oncology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Lauren A HendersonDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Sung-Yun PaiDivision of Hematology-Oncology, Boston Children's Hospital, Boston, Mass.
Robert P NelsonDivisions of Hematology and Oncology, Indiana University School of Medicine, Indianapolis, Ind.
Dalia H El-GhoneimyDepartment of Pediatric Allergy and Immunology, Children's Hospital, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Reem A El-FekyDepartment of Pediatric Allergy and Immunology, Children's Hospital, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Shereen M RedaDepartment of Pediatric Allergy and Immunology, Children's Hospital, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Elham HossnyDepartment of Pediatric Allergy and Immunology, Children's Hospital, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Pere Soler-PalacinPaediatric Infectious Diseases and Immunodeficiencies Unit, Vall d'Hebron University Hospital, Barcelona, Spain.
Ramsay L FuleihanDivision of Allergy and Immunology, Ann & Robert H. Lurie Children's Hospital of Chicago, Northwestern University Feinberg School of Medicine, Chicago, Ill.
Niraj C PatelImmunology Clinic, Levine Children's Hospital, Carolinas Medical Center, Charlotte, NC.
Michel J MassaadDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Raif S GehaDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass.
Jennifer M PuckDepartment of Pediatrics, University of California San Francisco and UCSF Benioff Children's Hospital, San Francisco, Calif.
Paolo PalmaDPUO, University Department of Pediatrics, Bambino Gesù Children's Hospital and University of Tor Vergata School of Medicine, Rome, Italy.
Caterina CancriniDPUO, University Department of Pediatrics, Bambino Gesù Children's Hospital and University of Tor Vergata School of Medicine, Rome, Italy.
Karin ChenDivision of Allergy, Immunology & Rheumatology, Department of Pediatrics, University of Utah, Salt Lake City, Utah.
Mauno VihinenDepartment of Experimental Medical Science, Lund University, Lund, Sweden.
Frederick W AltHoward Hughes Medical Institute, Program in Cellular and Molecular Medicine, Boston Children's Hospital, and the Department of Genetics, Harvard Medical School, Boston, Mass. Electronic address: alt@enders.tch.harvard.edu.
Luigi D NotarangeloDivision of Immunology and Manton Center for Orphan Disease Research, Children's Hospital, Harvard Medical School, Boston, Mass. Electronic address: luigi.notarangelo@childrens.harvard.edu.
Ain Shams University Hospital · EGDana-Farber/Boston Children's Cancer and Blood Disorders Center · USHarvard University · USBambino Gesù Children's Hospital · ITBoston Children's Hospital · USCentre Hospitalier Universitaire Sainte-Justine · CACincinnati Children's Hospital Medical Center · USHoward Hughes Medical Institute · USIndiana University – Purdue University Indianapolis · USKuwait University · KWLevine Children's Hospital · USLund University · SELurie Children's Hospital · USNewcastle University · GBUniversité de Montréal · CAUniversity of Brescia · ITUniversity of California, San Francisco · USUniversity of Utah · USVall d'Hebron Hospital Universitari · ES

Funding

Training of Clinical Investigators in Primary Immune DeficienciesU54AI082973 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DVORAK, CHRISTOPHER CRAIG, HADDAD, ELIE · 2009 to 2023
$23.3M
Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
Newborn Screening for T-Cell Disorders: Spectrum and OutcomesR01AI105776 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRENNER, STEVEN E, CHURCH, JOSEPH · 2013 to 2016
$2.4M
Autoimmunity in Rag Deficiency: A Nexus of Immunodeficiency and DysregulationK08AI103035 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI WALTER, JOLAN ESZTER · 2012 to 2016
$683k
Howard Hughes Medical InstituteNIAID NIH HHS 1P01AI076210-01A1NIAID NIH HHS K08 AI103035NIAID NIH HHS P01 AI076210NIAID NIH HHS R01 AI105776NIAID NIH HHS U54 AI082973NIAID NIH HHS U54AI082973
6 · The paper itself

Abstract

backgroundThe recombination-activating gene (RAG) 1/2 proteins play a critical role in the development of T and B cells by initiating the VDJ recombination process that leads to generation of a broad T-cell receptor (TCR) and B-cell receptor repertoire. Pathogenic mutations in the RAG1/2 genes result in various forms of primary immunodeficiency, ranging from T(-)B(-) severe combined immune deficiency to delayed-onset disease with granuloma formation, autoimmunity, or both. It is not clear what contributes to such heterogeneity of phenotypes.

objectiveWe sought to investigate the molecular basis for phenotypic diversity presented in patients with various RAG1 mutations.

methodsWe have developed a flow cytometry-based assay that allows analysis of RAG recombination activity based on green fluorescent protein expression and have assessed the induction of the Ighc locus rearrangements in mouse Rag1(-/-) pro-B cells reconstituted with wild-type or mutant human RAG1 (hRAG1) using deep sequencing technology.

resultsHere we demonstrate correlation between defective recombination activity of hRAG1 mutant proteins and severity of the clinical and immunologic phenotype and provide insights on the molecular mechanisms accounting for such phenotypic diversity.

conclusionsUsing a sensitive assay to measure the RAG1 activity level of 79 mutations in a physiologic setting, we demonstrate correlation between recombination activity of RAG1 mutants and the severity of clinical presentation and show that RAG1 mutants can induce specific abnormalities of the VDJ recombination process.

Indexed as

Genetic Association StudiesV(D)J RecombinationAllelesB-LymphocytesChildChild, PreschoolGene OrderGene RearrangementHomeodomain ProteinsHumansImmunoglobulin Heavy ChainsInfantInfant, NewbornMutationPhenotypeSevere Combined ImmunodeficiencyHomeodomain ProteinsImmunoglobulin Heavy ChainsRAG-1 proteinautoimmunitygenotype-phenotype correlationimmune repertoireOmenn syndromeRecombination-activating gene 1severe combined immune deficiencyV(D)J recombination

Identifiers

PMID24290284
PMCPMC4005599
OpenAlexW1996059130

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.