Evidence map›Paper›PMID 24286030›Full record

ArticleStem cell reports2013

A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis.

Elizabeth J Paik, Shaun Mahony, Richard M White, Emily N Price, Anthony Dibiase, Bilguujin Dorjsuren, Christian Mosimann, Alan J Davidson, David Gifford, Leonard I Zon

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

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  11. Development (Cambridge, England) · 2019
    Article
  12. Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Review
  14. Zebrafish Znfl1 proteins control the expression ofThe Journal of biological chemistry · 2017
    Article
  15. Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 3 countries.

Elizabeth J PaikStem Cell Program and Division of Hematology/Oncology, Boston Children's Hospital, Harvard Stem Cell Institute, Harvard Medical School and Howard Hughes Medical Institute, Boston, MA 02115, USA.
Shaun Mahony
Richard M White
Emily N Price
Anthony Dibiase
Bilguujin Dorjsuren
Christian Mosimann
Alan J Davidson
David Gifford
Leonard I Zon
Harvard University · USHoward Hughes Medical Institute · USBoston Children's Hospital · USMassachusetts Institute of Technology · USMemorial Sloan Kettering Cancer Center · USPennsylvania State University · USUniversity of Auckland · NZUniversity of Zurich · CH

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1985 to 2021
$38.9M
SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
CORE--ZEBRAFISHP30DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1999 to 2015
$14.3M
Customized stem cells for clinical application in blood disordersR24DK092760 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI COLLINS, JAMES J, DALEY, GEORGE Q · 2011 to 2018
$10.7M
Progenitor Cells inHuman Skeletal MuscleP50NS040828 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI GUSSONI, EMANUELA · 2008 to 2011
$5.9M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
COMPARATIVE APPROACH TO GLOBIN REGULATION/THALASSEMIAR01DK053298 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1998 to 2012
$3.9M
THYROID HORMONE ACTION IN THE PITUITARYR01DK049126 · NIDDK · UNIVERSITY OF CHICAGO · PI WONDISFORD, FREDRIC E. · 1995 to 2016
$3.8M
Integrated Genome Discovery at Single Base Pair ResolutionU01HG007037 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GIFFORD, DAVID K · 2012 to 2015
$2.2M
TEL GENE AND LEUKEMIASP50DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1994 to 1998
–
NHGRI NIH HHS U01 HG007037NHLBI NIH HHS 5P01HL32262-31NHLBI NIH HHS 5R01HL048801-21NHLBI NIH HHS P01 HL032262NHLBI NIH HHS R01 HL048801NICHD NIH HHS P30 HD018655NICHD NIH HHS P30-HD18655NIDDK NIH HHS 5P30 DK49126-19NIDDK NIH HHS DK53298-15NIDDK NIH HHS P30 DK049216NIDDK NIH HHS P50 DK049216NIDDK NIH HHS R01 DK049126NIDDK NIH HHS R01 DK053298NIDDK NIH HHS R24 DK092760NIDDK NIH HHS R24 DK092760-02NINDS NIH HHS P50 NS040828NINDS NIH HHS P50-NS40828
6 · The paper itself

Abstract

Deletion of caudal/cdx genes alters hox gene expression and causes defects in posterior tissues and hematopoiesis. Yet, the defects in hox gene expression only partially explain these phenotypes. To gain deeper insight into Cdx4 function, we performed chromatin immunoprecipitation sequencing (ChIP-seq) combined with gene-expression profiling in zebrafish, and identified the transcription factor spalt-like 4 (sall4) as a Cdx4 target. ChIP-seq revealed that Sall4 bound to its own gene locus and the cdx4 locus. Expression profiling showed that Cdx4 and Sall4 coregulate genes that initiate hematopoiesis, such as hox, scl, and lmo2. Combined cdx4/sall4 gene knockdown impaired erythropoiesis, and overexpression of the Cdx4 and Sall4 target genes scl and lmo2 together rescued the erythroid program. These findings suggest that auto- and cross-regulation of Cdx4 and Sall4 establish a stable molecular circuit in the mesoderm that facilitates the activation of the blood-specific program as development proceeds.

Indexed as

Gene Expression Regulation, DevelopmentalHematopoiesisAnimalsHomeodomain ProteinsLIM Domain ProteinsMesodermTranscription FactorsZebrafishZebrafish Proteinscdx4 protein, zebrafishHomeodomain ProteinsLIM Domain Proteinslmo2 protein, zebrafishSall4 protein, zebrafishTranscription FactorsZebrafish Proteins

Identifiers

PMID24286030
PMCPMC3841246
OpenAlexW2165737607

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.