Evidence map›Paper›PMID 24285849›Full record

SynthesisPlant physiology2014

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape.

Daniel H Chitwood, Aashish Ranjan, Ciera C Martinez, Lauren R Headland, Thinh Thiem, Ravi Kumar, Michael F Covington, Tommy Hatcher, Daniel T Naylor, Sharon Zimmerman and 9 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mining of Candidate Genes Associated with Leaf Shape Traits in Grapes.International journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Herbarium specimens reveal links betweenbioRxiv : the preprint server for biology · 2024
    Article
  14. Genetic basis of lineage-specific evolution of fruit traits in hexaploid persimmon.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Daniel H ChitwoodDepartment of Plant Biology , University of California, Davis, California 95616.
Aashish Ranjan
Ciera C Martinez
Lauren R Headland
Thinh Thiem
Ravi Kumar
Michael F Covington
Tommy Hatcher
Daniel T Naylor
Sharon Zimmerman
Nora Downs
Nataly Raymundo
Edward S Buckler
Julin N Maloof
Mallikarjuna Aradhya
Bernard Prins
Lin Li
Sean Myles
Neelima R Sinha

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Terroir, the unique interaction between genotype, environment, and culture, is highly refined in domesticated grape (Vitis vinifera). Toward cultivating terroir, the science of ampelography tried to distinguish thousands of grape cultivars without the aid of genetics. This led to sophisticated phenotypic analyses of natural variation in grape leaves, which within a palmate-lobed framework exhibit diverse patterns of blade outgrowth, hirsuteness, and venation patterning. Here, we provide a morphometric analysis of more than 1,200 grape accessions. Elliptical Fourier descriptors provide a global analysis of leaf outlines and lobe positioning, while a Procrustes analysis quantitatively describes venation patterning. Correlation with previous ampelography suggests an important genetic component, which we confirm with estimates of heritability. We further use RNA-Seq of mutant varieties and perform a genome-wide association study to explore the genetic basis of leaf shape. Meta-analysis reveals a relationship between leaf morphology and hirsuteness, traits known to correlate with climate in the fossil record and extant species. Together, our data demonstrate a genetic basis for the intricate diversity present in grape leaves. We discuss the possibility of using grape leaves as a breeding target to preserve terroir in the face of anticipated climate change, a major problem facing viticulture.

Indexed as

FruitGene Expression Regulation, PlantGenetics, PopulationGenetic VariationGenome-Wide Association StudyMutationPhenotypePlant LeavesRNA, PlantVitisRNA, Plant

Identifiers

PMID24285849
PMCPMC3875807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.