Evidence map›Paper›PMID 24285299›Full record

ArticleNucleic acids research2014

YY1 DNA binding and interaction with YAF2 is essential for Polycomb recruitment.

Arindam Basu, Frank H Wilkinson, Kristen Colavita, Colin Fennelly, Michael L Atchison

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Epigenomes · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
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  13. Article
  14. Article
  15. Article
  16. Review
  17. Genetic and Epigenetic Control of Heart Development.Cold Spring Harbor perspectives in biology · 2020
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arindam BasuDepartment of Animal Biology, University of Pennsylvania School of Veterinary Medicine, 3800 Spruce Street, Philadelphia, PA 19104, USA and College of Science Health and Liberal Arts, Philadelphia University, 4201 Henry Avenue, Philadelphia, PA 19144, USA.
Frank H Wilkinson
Kristen Colavita
Colin Fennelly
Michael L Atchison
University of Pennsylvania · US

Funding

Control of B cell Development by YY1R01AI079002 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2020
$4.3M
Developmental Control of Enhancer FunctionR01GM082841 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2013
$1.2M
NIAID NIH HHS AI-079002NIAID NIH HHS R01 AI079002NIGMS NIH HHS GM082841NIGMS NIH HHS R01 GM082841
6 · The paper itself

Abstract

Polycomb Group (PcG) proteins are crucial for epigenetic inheritance of cell identity and are functionally conserved from Drosophila to humans. PcG proteins regulate expression of homeotic genes and are essential for axial body patterning during development. Earlier we showed that transcription factor YY1 functions as a PcG protein. YY1 also physically interacts with YAF2, a homolog of RYBP. Here we characterize the mechanism and physiologic relevance of this interaction. We found phenotypic and biochemical correction of dRYBP mutant flies by mouse YAF2 demonstrating functional conservation across species. Further biochemical analysis revealed that YAF2 bridges interaction between YY1 and the PRC1 complex. ChIP assays in HeLa cells showed that YAF2 is responsible for PcG recruitment to DNA, which is mediated by YY1 DNA binding. Knock-down of YY1 abrogated PcG recruitment, which was not compensated by exogenous YAF2 demonstrating that YY1 DNA binding is a priori necessary for Polycomb assembly on chromatin. Finally, we found that although YAF2 and RYBP regulate a similar number of Polycomb target genes, there are very few genes that are regulated by both implying functional distinction between the two proteins. We present a model of YAF2-dependent and independent PcG DNA recruitment by YY1.

Indexed as

Gene SilencingAnimalsChromatinDNADrosophilaDrosophila ProteinsHEK293 CellsHeLa CellsHumansMiceMuscle ProteinsMutationPhenotypePolycomb Repressive Complex 1Protein Interaction Domains and MotifsRepressor ProteinsChromatinDNADrosophila ProteinsMuscle ProteinsPc protein, DrosophilaPolycomb Repressive Complex 1Repressor ProteinsRYBP protein, DrosophilaYAF2 protein, humanYaf2 protein, mouseYY1 Transcription Factor

Identifiers

PMID24285299
PMCPMC3936737
OpenAlexW1976889804

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.