Evidence map›Paper›PMID 24284630›Full record

ArticleNature2014

Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity.

John W Schoggins, Donna A MacDuff, Naoko Imanaka, Maria D Gainey, Bimmi Shrestha, Jennifer L Eitson, Katrina B Mar, R Blake Richardson, Alexander V Ratushny, Vladimir Litvak and 12 more

Erratum issuedAbstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 637 papers.

0numbers the graph read from it
0cells of the map it votes in
637citing papers in PubMed
31.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

637 citing papers in PubMed, 891 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

577 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 3 countries.

John W Schoggins1] Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York 10065, USA [2] Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA (J.W.S.); MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland G61 1QH, UK (R.M.E.).
Donna A MacDuffDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Naoko ImanakaLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York 10065, USA.
Maria D GaineyRheumatology Division, Department of Medicine, and Howard Hughes Medical Institute, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Bimmi ShresthaInfectious Diseases Division, Department of Medicine and Department of Molecular Microbiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Jennifer L EitsonDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Katrina B MarDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
R Blake RichardsonDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Alexander V Ratushny1] Seattle Biomedical Research Institute, Seattle, Washington 98109, USA [2] Institute for Systems Biology, Seattle, Washington 98109, USA.
Vladimir LitvakSeattle Biomedical Research Institute, Seattle, Washington 98109, USA.
Rea DabelicDepartment of Microbiology and Immunology, Columbia University, New York, New York 10032, USA.
Balaji ManicassamyDepartment of Microbiology, University of Chicago, Chicago, Illinois 60637, USA.
John D Aitchison1] Seattle Biomedical Research Institute, Seattle, Washington 98109, USA [2] Institute for Systems Biology, Seattle, Washington 98109, USA.
Alan AderemSeattle Biomedical Research Institute, Seattle, Washington 98109, USA.
Richard M Elliott1] School of Biology, University of St Andrews, St Andrews, Scotland KY16 9ST, UK [2] Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA (J.W.S.); MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland G61 1QH, UK (R.M.E.).
Adolfo García-Sastre1] Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA [2] Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA [3] Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.
Vincent RacanielloDepartment of Microbiology and Immunology, Columbia University, New York, New York 10032, USA.
Eric J SnijderDepartment of Medical Microbiology, Leiden University Medical Center, Leiden 2300 RC, The Netherlands.
Wayne M YokoyamaRheumatology Division, Department of Medicine, and Howard Hughes Medical Institute, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Michael S Diamond1] Department of Pathology and Immunology, Washington University School of Medicine, St Louis, Missouri 63110, USA [2] Infectious Diseases Division, Department of Medicine and Department of Molecular Microbiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Herbert W VirginDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York 10065, USA.
Center for Infectious Disease Research · USWashington University in St. Louis · USRockefeller University · USThe University of Texas Southwestern Medical Center · USColumbia University · USHoward Hughes Medical Institute · USIcahn School of Medicine at Mount Sinai · USLeiden University Medical Center · NLUniversity of Chicago · USUniversity of St Andrews · GB

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
Virology and Smallpox VaccinationsU54AI057160 · NIAID · WASHINGTON UNIVERSITY · PI RAY, RANJIT · 2003 to 2013
$80.9M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI OZINSKY, ADRIAN · 2006 to 2016
$30.6M
LPS Signaling in Macrophages: The Roll of TollR01AI032972 · NIAID · UNIVERSITY OF WASHINGTON · PI ADEREM, ALAN A · 1992 to 2020
$14.6M
TRIM mediated host antiviral responses during influenza virus infectionsU19AI083025 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HA, TAEKJIP · 2009 to 2013
$10.0M
INTEGRATIVE IMMUNOLOGY TRAINING PROGRAMT32AI005284 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Nan Yan · 2003 to 2026
$7.4M
LPS REGULATION OF MACROPHAGE FUNCTIONR01AI025032 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI ADEREM, ALAN A · 1987 to 2016
$6.7M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
TRAINING IN THE IMMUNOLOGY OF RHEUMATIC DISEASEST32AR007279 · NIAMS · WASHINGTON UNIVERSITY · PI Megan Anne Cooper, Deborah J Lenschow · 1986 to 2026
$6.0M
Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
ISG CONTROL OF FLAVIVIRUS INFECTIONR01AI104972 · NIAID · WASHINGTON UNIVERSITY · PI CHANDA, SUMIT K, DIAMOND, MICHAEL S · 2013 to 2017
$3.0M
Antagonism of Innate Immunity By PicornavirusesR01AI102597 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RACANIELLO, VINCENT R · 2012 to 2016
$2.0M
CSP VA HHSN272200900041CU19Howard Hughes Medical InstituteMedical Research Council G0801822NIAID NIH HHS AI057158NIAID NIH HHS AI057160NIAID NIH HHS AI083025NIAID NIH HHS AI091707NIAID NIH HHS AI095611NIAID NIH HHS AI104972NIAID NIH HHS HHSN266200700010CNIAID NIH HHS HHSN272200900041CNIAID NIH HHS R00 AI095320NIAID NIH HHS R01 AI025032NIAID NIH HHS R01 AI032972NIAID NIH HHS R01 AI091707NIAID NIH HHS R01 AI102597NIAID NIH HHS R01 AI104972NIAID NIH HHS T32 AI005284NIAID NIH HHS U01 AI095611NIAID NIH HHS U19 AI083025NIAID NIH HHS U54 AI057158NIAID NIH HHS U54 AI057160NIAMS NIH HHS T32 AR007279NIDDK NIH HHS DK095031NIDDK NIH HHS K01 DK095031NIGMS NIH HHS GM076547NIGMS NIH HHS GM103511NIGMS NIH HHS P50 GM076547NIGMS NIH HHS U54 GM103511Wellcome Trust 099220
6 · The paper itself

Abstract

The type I interferon (IFN) response protects cells from viral infection by inducing hundreds of interferon-stimulated genes (ISGs), some of which encode direct antiviral effectors. Recent screening studies have begun to catalogue ISGs with antiviral activity against several RNA and DNA viruses. However, antiviral ISG specificity across multiple distinct classes of viruses remains largely unexplored. Here we used an ectopic expression assay to screen a library of more than 350 human ISGs for effects on 14 viruses representing 7 families and 11 genera. We show that 47 genes inhibit one or more viruses, and 25 genes enhance virus infectivity. Comparative analysis reveals that the screened ISGs target positive-sense single-stranded RNA viruses more effectively than negative-sense single-stranded RNA viruses. Gene clustering highlights the cytosolic DNA sensor cyclic GMP-AMP synthase (cGAS, also known as MB21D1) as a gene whose expression also broadly inhibits several RNA viruses. In vitro, lentiviral delivery of enzymatically active cGAS triggers a STING-dependent, IRF3-mediated antiviral program that functions independently of canonical IFN/STAT1 signalling. In vivo, genetic ablation of murine cGAS reveals its requirement in the antiviral response to two DNA viruses, and an unappreciated contribution to the innate control of an RNA virus. These studies uncover new paradigms for the preferential specificity of IFN-mediated antiviral pathways spanning several virus families.

Indexed as

AnimalsCluster AnalysisCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDNA VirusesFlow CytometryGene LibraryImmunity, InnateInterferon Regulatory Factor-3InterferonsMembrane ProteinsMiceMice, KnockoutNucleotidyltransferasesRNA VirusesSTAT1 Transcription FactorSTING ProteincGAS protein, mouseCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseInterferon Regulatory Factor-3InterferonsIrf3 protein, mouseMembrane ProteinsNucleotidyltransferasesStat1 protein, mouseSTAT1 Transcription FactorSting1 protein, mouseSTING Protein

Identifiers

PMID24284630
PMCPMC4077721
OpenAlexW2058277625

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.