Evidence map›Paper›PMID 24282159›Full record

ArticleHuman mutation2014

Enhanced sensitivity for detection of low-level germline mosaic RB1 mutations in sporadic retinoblastoma cases using deep semiconductor sequencing.

Zhao Chen, Kimberly Moran, Jennifer Richards-Yutz, Erik Toorens, Daniel Gerhart, Tapan Ganguly, Carol L Shields, Arupa Ganguly

Abstract read
In one paragraph

Article in Human mutation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
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  10. Frontiers in neurology · 2022
    Article
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  13. Next-Generation Sequencing Applications for Inherited Retinal Diseases.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhao ChenGenetic Diagnostic Laboratory, Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Kimberly Moran
Jennifer Richards-Yutz
Erik Toorens
Daniel Gerhart
Tapan Ganguly
Carol L Shields
Arupa Ganguly
University of Pennsylvania · USWills Eye Hospital · US

Funding

Parental genotypes and exposures in sporadic retinoblastomaR01CA118580 · NCI · UNIVERSITY OF PENNSYLVANIA · PI GANGULY, ARUPA · 2007 to 2011
$3.5M
Application of genomic approaches to classify retinoblastoma tumorsR21CA123196 · NCI · UNIVERSITY OF PENNSYLVANIA · PI GANGULY, ARUPA · 2007 to 2008
$352k
NCI NIH HHS CA-118580-03S1NCI NIH HHS R01 CA118580NCI NIH HHS R01-CA118580NCI NIH HHS R21 CA123196
6 · The paper itself

Abstract

Sporadic retinoblastoma (RB) is caused by de novo mutations in the RB1 gene. Often, these mutations are present as mosaic mutations that cannot be detected by Sanger sequencing. Next-generation deep sequencing allows unambiguous detection of the mosaic mutations in lymphocyte DNA. Deep sequencing of the RB1 gene on lymphocyte DNA from 20 bilateral and 70 unilateral RB cases was performed, where Sanger sequencing excluded the presence of mutations. The individual exons of the RB1 gene from each sample were amplified, pooled, ligated to barcoded adapters, and sequenced using semiconductor sequencing on an Ion Torrent Personal Genome Machine. Six low-level mosaic mutations were identified in bilateral RB and four in unilateral RB cases. The incidence of low-level mosaic mutation was estimated to be 30% and 6%, respectively, in sporadic bilateral and unilateral RB cases, previously classified as mutation negative. The frequency of point mutations detectable in lymphocyte DNA increased from 96% to 97% for bilateral RB and from 13% to 18% for unilateral RB. The use of deep sequencing technology increased the sensitivity of the detection of low-level germline mosaic mutations in the RB1 gene. This finding has significant implications for improved clinical diagnosis, genetic counseling, surveillance, and management of RB.

Indexed as

Genes, RetinoblastomaGerm-Line MutationAllelesCalibrationChild, PreschoolDNA Mutational AnalysisExonsFemaleGene DeletionGene DuplicationGenotypeHigh-Throughput Nucleotide SequencingHumansInfantInfant, NewbornMaleRetinoblastoma Proteinmosaic mutationnext-generation sequencingRB1sporadic retinoblastoma

Identifiers

PMID24282159
PMCPMC4112364
OpenAlexW2165981075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.