Evidence map›Paper›PMID 24281366›Full record

Trial reportEuropean journal of human genetics : EJHG2014

Exome sequencing in developmental eye disease leads to identification of causal variants in GJA8, CRYGC, PAX6 and CYP1B1.

Ivan Prokudin, Cas Simons, John R Grigg, Rebecca Storen, Vikrant Kumar, Zai Y Phua, James Smith, Maree Flaherty, Sonia Davila, Robyn V Jamieson

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in European journal of human genetics : EJHG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A Practical Guide to Genetic Eye Conditions for Paediatricians.Journal of paediatrics and child health · 2025
    Review
  5. NovelInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Observational
  8. A Novel Mutation inOphthalmology science · 2022
    Article
  9. Article
  10. Case Report: AFrontiers in genetics · 2022
    Article
  11. Article
  12. Review
  13. The genetic landscape of crystallins in congenital cataract.Orphanet journal of rare diseases · 2020
    Article
  14. Novel Mutations inFrontiers in cell and developmental biology · 2020
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Ivan Prokudin1] Eye and Developmental Genetics Research Group, Western Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, NSW, Australia [2] Children's Medical Research Institute, Sydney, NSW, Australia.
Cas SimonsInstitute for Molecular Bioscience, University of Queensland, Brisbane, QLD, Australia.
John R Grigg1] Eye and Developmental Genetics Research Group, Western Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, NSW, Australia [2] Discipline of Ophthalmology and Save Sight Institute, University of Sydney, Sydney, NSW, Australia.
Rebecca Storen1] Eye and Developmental Genetics Research Group, Western Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, NSW, Australia [2] Children's Medical Research Institute, Sydney, NSW, Australia [3] Discipline of Ophthalmology and Save Sight Institute, University of Sydney, Sydney, NSW, Australia.
Vikrant KumarHuman Genetics, Genome Institute of Singapore, Singapore.
Zai Y PhuaHuman Genetics, Genome Institute of Singapore, Singapore.
James SmithDepartment of Ophthalmology, The Children's Hospital at Westmead, Sydney, NSW, Australia.
Maree FlahertyDepartment of Ophthalmology, The Children's Hospital at Westmead, Sydney, NSW, Australia.
Sonia DavilaHuman Genetics, Genome Institute of Singapore, Singapore.
Robyn V Jamieson1] Eye and Developmental Genetics Research Group, Western Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, NSW, Australia [2] Children's Medical Research Institute, Sydney, NSW, Australia [3] Discipline of Ophthalmology and Save Sight Institute, University of Sydney, Sydney, NSW, Australia [4] Disciplines of Paediatrics and Child Health and Genetic Medicine, University of Sydney, Sydney, NSW, Australia.
Genome Institute of Singapore · SGChildren's Hospital at Westmead · AUChildren's Medical Research Institute · AUUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Developmental eye diseases, including cataract/microcornea, Peters anomaly and coloboma/microphthalmia/anophthalmia, are caused by mutations encoding many different signalling and structural proteins in the developing eye. All modes of Mendelian inheritance occur and many are sporadic cases, so provision of accurate recurrence risk information for families and affected individuals is highly challenging. Extreme genetic heterogeneity renders testing for all known disease genes clinically unavailable with traditional methods. We used whole-exome sequencing in 11 unrelated developmental eye disease patients, as it provides a strategy for assessment of multiple disease genes simultaneously. We identified five causative variants in four patients in four different disease genes, GJA8, CRYGC, PAX6 and CYP1B1. This detection rate (36%) is high for a group of patients where clinical testing is frequently not undertaken due to lack of availability and cost. The results affected clinical management in all cases. These variants were detected in the cataract/microcornea and Peters anomaly patients. In two patients with coloboma/microphthalmia, variants in ABCB6 and GDF3 were identified with incomplete penetrance, highlighting the complex inheritance pattern associated with this phenotype. In the coloboma/microphthalmia patients, four other variants were identified in CYP1B1, and CYP1B1 emerged as a candidate gene to be considered as a modifier in coloboma/microphthalmia.

Indexed as

MutationATP-Binding Cassette TransportersConnexin 50ConnexinsCytochrome P-450 CYP1B1DNA Mutational AnalysisExomeEye Diseases, HereditaryEye ProteinsFemalegamma-CrystallinsGrowth Differentiation Factor 3Homeodomain ProteinsHumansMalePaired Box Transcription FactorsABCB6 protein, humanATP-Binding Cassette TransportersConnexin 50ConnexinsCrygc protein, humanCYP1B1 protein, humanCytochrome P-450 CYP1B1Eye Proteinsgamma-CrystallinsGDF3 protein, humanGrowth Differentiation Factor 3Homeodomain ProteinsPaired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorRepressor Proteins

Identifiers

PMID24281366
PMCPMC4060118
OpenAlexW2069133026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.