ArticleGenome biology and evolution2013
Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species.
Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 45 citations in OpenAlex.
- Ghr-miR166b-GhHB14 Pair With GhDLO1 Partner Mediates Cotton Plant Defence Against Verticillium dahliae.Molecular plant pathology · 2025Article
- Exploring the Effectiveness and Durability of Trans-Kingdom Silencing of Fungal Genes in the Vascular PathogenInternational journal of molecular sciences · 2022Article
- RNA-Seq with a novel glabrous-ZM24fl reveals some key lncRNAs and the associated targets in fiber initiation of cotton.BMC plant biology · 2022Article
- Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae).Plant molecular biology · 2020Article
- The evolution of genomic and epigenomic features in two Pleurotus fungi.Scientific reports · 2018Article
- Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation.The New phytologist · 2018Article
- Differential expression of microRNAs during fiber development between fuzzless-lintless mutant and its wild-type allotetraploid cotton.Scientific reports · 2017Article
- MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton.BMC plant biology · 2017Article
- ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium.Nucleic acids research · 2017Article
- Small RNA changes in synthetic Brassica napus.Planta · 2016Article
- Genome-Wide Analysis of Long Noncoding RNAs and Their Responses to Drought Stress in Cotton (Gossypium hirsutum L.).PloS one · 2016Article
- Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus.Journal of experimental botany · 2015Article
- Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites.Scientific reports · 2015Article
- Review
- Expression profiles of miRNAs in Gossypium raimondii.Journal of Zhejiang University. Science. B · 2015Article
- Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton.Journal of experimental botany · 2015Article
- Article
- GraP: platform for functional genomics analysis of Gossypium raimondii.Database : the journal of biological databases and curation · 2015Article
- sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software.Nucleic acids research · 2014Article
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Authors and funding
5 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs are ubiquitous in plant genomes but vary greatly in their abundance within and conservation among plant lineages. To gain insight into the evolutionary birth/death dynamics of microRNA families, we sequenced small RNA and 5'-end PARE libraries generated from two closely related species of Gossypium. Here, we demonstrate that 33 microRNA families, with similar copy numbers and average evolutionary rates, are conserved in the two congeneric cottons. Analysis of the presence/absence of these microRNA families in other land plants sheds light on their depth of phylogenetic origin and lineage-specific loss/gain. Conserved microRNA families in Gossypium exhibit a striking interspecific asymmetry in expression, potentially connected to relative proximity to neighboring transposable elements. A complex correlated expression pattern of microRNA target genes with their controlling microRNAs indicates that possible functional divergence of conserved microRNA families can also exist even within a single plant genus.
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