Evidence map›Paper›PMID 24280218›Full record

ArticleThe Journal of biological chemistry2014

A novel mercuric reductase from the unique deep brine environment of Atlantis II in the Red Sea.

Ahmed Sayed, Mohamed A Ghazy, Ari J S Ferreira, João C Setubal, Felipe S Chambergo, Amged Ouf, Mustafa Adel, Adam S Dawe, John A C Archer, Vladimir B Bajic and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Industrial Biotechnology Based on Enzymes From Extreme Environments.Frontiers in bioengineering and biotechnology · 2022
    Review
  5. Expanded Diversity and Phylogeny ofFrontiers in microbiology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Ahmed SayedFrom the Department of Biology and the Science and Technology Research Center, School of Sciences and Engineering, The American University in Cairo, AUC Avenue, P. O. Box 74, New Cairo 11835, Egypt.
Mohamed A Ghazy
Ari J S Ferreira
João C Setubal
Felipe S Chambergo
Amged Ouf
Mustafa Adel
Adam S Dawe
John A C Archer
Vladimir B Bajic
Rania Siam
Hamza El-Dorry
American University in Cairo · EGKing Abdullah University of Science and Technology · SAUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A unique combination of physicochemical conditions prevails in the lower convective layer (LCL) of the brine pool at Atlantis II (ATII) Deep in the Red Sea. With a maximum depth of over 2000 m, the pool is characterized by acidic pH (5.3), high temperature (68 °C), salinity (26%), low light levels, anoxia, and high concentrations of heavy metals. We have established a metagenomic dataset derived from the microbial community in the LCL, and here we describe a gene for a novel mercuric reductase, a key component of the bacterial detoxification system for mercuric and organomercurial species. The metagenome-derived gene and an ortholog from an uncultured soil bacterium were synthesized and expressed in Escherichia coli. The properties of their products show that, in contrast to the soil enzyme, the ATII-LCL mercuric reductase is functional in high salt, stable at high temperatures, resistant to high concentrations of Hg(2+), and efficiently detoxifies Hg(2+) in vivo. Interestingly, despite the marked functional differences between the orthologs, their amino acid sequences differ by less than 10%. Site-directed mutagenesis and kinetic analysis of the mutant enzymes, in conjunction with three-dimensional modeling, have identified distinct structural features that contribute to extreme halophilicity, thermostability, and high detoxification capacity, suggesting that these were acquired independently during the evolution of this enzyme. Thus, our work provides fundamental structural insights into a novel protein that has undergone multiple biochemical and biophysical adaptations to promote the survival of microorganisms that reside in the extremely demanding environment of the ATII-LCL.

Indexed as

MetagenomeOceans and SeasWater MicrobiologyBase SequenceHydrogen-Ion ConcentrationKineticsMercuryMolecular Sequence DataMutagenesis, Site-DirectedOxidoreductasesRecombinant ProteinsSeawatermercuric reductaseMercuryOxidoreductasesRecombinant ProteinsAtlantis II Brine PoolEnzyme KineticsEnzyme MechanismsEnzyme StructureExtreme HalophilicMercuric ReductaseMetagenomicsMutagenesis Site-specificRed Sea Atlantis IIThermophilic

Identifiers

PMID24280218
PMCPMC3894346
OpenAlexW1992603579

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.