Evidence map›Paper›PMID 24279857›Full record

ArticlePharmacogenomics2013

Not so pseudo anymore: pseudogenes as therapeutic targets.

Thomas C Roberts, Kevin V Morris

Open access · greenAbstract read
In one paragraph

Article in Pharmacogenomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Epigenetic mechanisms in Tendon Ageing.British medical bulletin · 2020
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Interaction betweenPathogens (Basel, Switzerland) · 2021
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. GENCODE Pseudogenes.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Thomas C RobertsDepartment of Molecular & Experimental Medicine, The Scripps Research Institute, 10550 N Torrey Pines Road, La Jolla, CA 92037, USA.
Kevin V Morris
Scripps Research Institute · US

Funding

Targeted Delivery Vechicles for OligonucleotidesP01AI099783 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI AKKINA, RAMESH · 2012 to 2016
$7.4M
Activation of silenced tumor suppressor genes by non-coding RNAR01CA151574 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI VOGT, PETER K · 2010 to 2014
$1.9M
The Antisense Transcriptome and the Epigenetics of Cancer.R01CA153124 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI VOGT, PETER K · 2010 to 2013
$1.2M
ncRNA targeted excision of HIV-1 from human cellsR56AI096861 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MORRIS, KEVIN V · 2011 to 2011
$474k
NCI NIH HHS CA151574-01NCI NIH HHS R01 CA151574NCI NIH HHS R01 CA153124NCI NIH HHS R01 CA153124-01NIAID NIH HHS P01 AI099783NIAID NIH HHS P01 AI099783-01NIAID NIH HHS R56 AI096861NIAID NIH HHS R56 AI096861-01
6 · The paper itself

Abstract

Pseudogenes are junk DNA gene remnants generated by inactivating mutations or the loss of regulatory sequences, often following gene duplication or retrotransposition events. These pseudogenes have previously been considered to be molecular fossils derived from once-coding genes. In many cases, pseudogenes confer no observable selective advantage to the host organism and may be on a path towards removal from the genome. However, pseudogenes can also serve as raw material for the exaptation of novel functions, particularly in relation to the regulation of gene expression. Many pseudogenes are resurrected as noncoding RNA genes, which function in RNA-based gene regulatory circuits. As such, functional pseudogenes might simply be considered as 'genes'. Here, we discuss the role of these pseudogene-derived RNAs as regulators of gene expression in the context of human disease. In particular, we consider the manipulation of pseudogene transcripts through the use of antisense oligonucleotides, siRNAs, aptamers or classical gene therapy approaches as novel pharmacological strategies.

Indexed as

Molecular Targeted TherapyEpigenesis, GeneticEvolution, MolecularGene Expression RegulationGenome, HumanHumansPseudogenesRNA, Small InterferingRNA, UntranslatedTranscription, GeneticRNA, Small InterferingRNA, Untranslated

Identifiers

PMID24279857
PMCPMC4068744
OpenAlexW2121607295

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.