ArticlePloS one2013
Discovery of genes related to witches broom disease in Paulownia tomentosa × Paulownia fortunei by a De Novo assembled transcriptome.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 44 citations in OpenAlex.
- Paulownia Witches' Broom Disease: A Comprehensive Review.Microorganisms · 2024Review
- Combined transcriptome and metabolome analysis of Nerium indicum L. elaborates the key pathways that are activated in response to witches' broom disease.BMC plant biology · 2022Article
- 'Candidatus Phytoplasma solani' interferes with the distribution and uptake of iron in tomato.BMC genomics · 2019Article
- Phytoplasma-induced Changes in the Acetylome and Succinylome ofMolecular & cellular proteomics : MCP · 2019Article
- Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection.BMC genomics · 2019Article
- ceRNA Cross-Talk in Paulownia Witches' Broom Disease.International journal of molecular sciences · 2018Article
- Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection inInternational journal of genomics · 2018Article
- Proteome Profiling of Paulownia Seedlings Infected with Phytoplasma.Frontiers in plant science · 2017Article
- Article
- Discovery of microRNAs and transcript targets related to witches' broom disease in Paulownia fortunei by high-throughput sequencing and degradome approach.Molecular genetics and genomics : MGG · 2016Article
- Quantitative Proteomic and Transcriptomic Study on Autotetraploid Paulownia and Its Diploid Parent Reveal Key Metabolic Processes Associated with Paulownia Autotetraploidization.Frontiers in plant science · 2016Article
- Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa.BMC genomics · 2015Article
- Transcriptomics-based analysis using RNA-Seq of the coconut (Cocos nucifera) leaf in response to yellow decline phytoplasma infection.Molecular genetics and genomics : MGG · 2015Article
- In-Depth Transcriptome Sequencing of Mexican Lime Trees Infected with Candidatus Phytoplasma aurantifolia.PloS one · 2015Article
- Article
- Plant-pathogen interaction, circadian rhythm, and hormone-related gene expression provide indicators of phytoplasma infection in Paulownia fortunei.International journal of molecular sciences · 2014Article
- Identification of genes related to Paulownia witches' broom by AFLP and MSAP.International journal of molecular sciences · 2014Article
- Differential transcriptome analysis between Paulownia fortunei and its synthesized autopolyploid.International journal of molecular sciences · 2014Article
- Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In spite of its economic importance, very little molecular genetics and genomic research has been targeted at the family Paulownia spp. The little genetic information on this plant is a big obstacle to studying the mechanisms of its ability to resist Paulownia Witches' Broom (PaWB) disease. Analysis of the Paulownia transcriptome and its expression profile data are essential to extending the genetic resources on this species, thus will greatly improves our studies on Paulownia. In the current study, we performed the de novo assembly of a transcriptome on P. tomentosa × P. fortunei using the short-read sequencing technology (Illumina). 203,664 unigenes with a mean length of 1,328 bp was obtained. Of these unigenes, 32,976 (30% of all unigenes) containing complete structures were chosen. Eukaryotic clusters of orthologous groups, gene orthology, and the Kyoto Encyclopedia of Genes and Genomes annotations were performed of these unigenes. Genes related to PaWB disease resistance were analyzed in detail. To our knowledge, this is the first study to elucidate the genetic makeup of Paulownia. This transcriptome provides a quick way to understanding Paulownia, increases the number of gene sequences available for further functional genomics studies and provides clues to the identification of potential PaWB disease resistance genes. This study has provided a comprehensive insight into gene expression profiles at different states, which facilitates the study of each gene's roles in the developmental process and in PaWB disease resistance.
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