Evidence map›Paper›PMID 24278246›Full record

ArticlePloS one2013

Harnessing gene conversion in chicken B cells to create a human antibody sequence repertoire.

Benjamin Schusser, Henry Yi, Ellen J Collarini, Shelley Mettler Izquierdo, William D Harriman, Robert J Etches, Philip A Leighton

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  14. Genome Modification Technologies and Their Applications in Avian Species.International journal of molecular sciences · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Benjamin SchusserDepartment of Animal Science, University of California Davis, Davis, California, United States of America.
Henry Yi
Ellen J Collarini
Shelley Mettler Izquierdo
William D Harriman
Robert J Etches
Philip A Leighton
University of California, Davis · US

Funding

Engineered proteins from transgenic animalsR43GM090626 · NIGMS · CRYSTAL BIOSCIENCE, INC. · PI ETCHES, ROBERT · 2010 to 2010
$172k
NIGMS NIH HHS R43 GM090626
6 · The paper itself

Abstract

Transgenic chickens expressing human sequence antibodies would be a powerful tool to access human targets and epitopes that have been intractable in mammalian hosts because of tolerance to conserved proteins. To foster the development of the chicken platform, it is beneficial to validate transgene constructs using a rapid, cell culture-based method prior to generating fully transgenic birds. We describe a method for the expression of human immunoglobulin variable regions in the chicken DT40 B cell line and the further diversification of these genes by gene conversion. Chicken VL and VH loci were knocked out in DT40 cells and replaced with human VK and VH genes. To achieve gene conversion of human genes in chicken B cells, synthetic human pseudogene arrays were inserted upstream of the functional human VK and VH regions. Proper expression of chimeric IgM comprised of human variable regions and chicken constant regions is shown. Most importantly, sequencing of DT40 genetic variants confirmed that the human pseudogene arrays contributed to the generation of diversity through gene conversion at both the Igl and Igh loci. These data show that engineered pseudogene arrays produce a diverse pool of human antibody sequences in chicken B cells, and suggest that these constructs will express a functional repertoire of chimeric antibodies in transgenic chickens.

Indexed as

Gene ConversionAmino Acid SequenceAnimalsAnimals, Genetically ModifiedAntibodiesBase SequenceBlotting, WesternB-LymphocytesCell LineChickensDNA PrimersFlow CytometryHumansMolecular Sequence DataSequence Homology, Amino AcidAntibodiesDNA Primers

Identifiers

PMID24278246
PMCPMC3837002
OpenAlexW2068043670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.