Evidence map›Paper›PMID 24277738›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014

Global transcriptional response to heat shock of the legume symbiont Mesorhizobium loti MAFF303099 comprises extensive gene downregulation.

Ana Alexandre, Marta Laranjo, Solange Oliveira

Abstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. The Proteogenome of SymbioticMicroorganisms · 2022
    Article
  3. Analysis ofMicroorganisms · 2022
    Article
  4. Transcriptomic Studies Reveal that theInternational journal of molecular sciences · 2019
    Article
  5. Article
  6. Article
  7. Two Rieske Fe/S Proteins and TAT System inFrontiers in plant science · 2018
    Article
  8. Dissecting the Acid Stress Response ofFrontiers in microbiology · 2018
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ana Alexandre1ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas (Laboratório de Microbiologia do Solo), Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554 Évora, Portugal.
Marta Laranjo
Solange Oliveira

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizobia, the bacterial legume symbionts able to fix atmospheric nitrogen inside root nodules, have to survive in varied environmental conditions. The aim of this study was to analyse the transcriptional response to heat shock of Mesorhizobium loti MAFF303099, a rhizobium with a large multipartite genome of 7.6 Mb that nodulates the model legume Lotus japonicus. Using microarray analysis, extensive transcriptomic changes were detected in response to heat shock: 30% of the protein-coding genes were differentially expressed (2067 genes in the chromosome, 62 in pMLa and 57 in pMLb). The highest-induced genes are in the same operon and code for two sHSP. Only one of the five groEL genes in MAFF303099 genome was induced by heat shock. Unlike other prokaryotes, the transcriptional response of this Mesorhizobium included the underexpression of an unusually large number of genes (72% of the differentially expressed genes). This extensive downregulation of gene expression may be an important part of the heat shock response, as a way of reducing energetic costs under stress. To our knowledge, this study reports the heat shock response of the largest prokaryote genome analysed so far, representing an important contribution to understand the response of plant-interacting bacteria to challenging environmental conditions.

Indexed as

Down-RegulationHeat-Shock ProteinsHeat-Shock ResponseLotusMesorhizobiumMolecular ChaperonesSymbiosisTranscriptional ActivationHeat-Shock ProteinsMolecular ChaperoneschaperonemicroarraysrhizobiasHSPstress

Identifiers

PMID24277738
PMCPMC3989490

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.