Evidence map›Paper›PMID 24277689›Full record

ArticleGenome biology and evolution2013

The complex evolutionary dynamics of Hsp70s: a genomic and functional perspective.

Jacek Kominek, Jaroslaw Marszalek, Cécile Neuvéglise, Elizabeth A Craig, Barry L Williams

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  8. Article
  9. Chaperone Networks in Fungal Pathogens of Humans.Journal of fungi (Basel, Switzerland) · 2021
    Review
  10. Structural Communication between theInternational journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Jacek KominekLaboratory of Evolutionary Biochemistry, Intercollegiate Faculty of Biotechnology, University of Gdansk, Kladki, Poland.
Jaroslaw Marszalek
Cécile Neuvéglise
Elizabeth A Craig
Barry L Williams
University of Wisconsin–Madison · USMichigan State University · USMicrobiologie de l’alimentation au service de la santé · FRUniversity of Gdańsk · PL

Funding

TRANSCRIPTIONALLY REGULATED GENESR01GM027870 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CRAIG, ELIZABETH A · 1985 to 2017
$5.8M
REGULATION AND FUNCTION OF THE YEAST HEAT SHOCK RESPONSER37GM031107 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CRAIG, ELIZABETH A · 1999 to 2008
$3.3M
REGULATION AND FUNCTION OF THE YEAST HEAT SHOCK RESPONSER01GM031107 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CRAIG, ELIZABETH A · 1985 to 2012
$1.9M
NIGMS NIH HHS GM27870NIGMS NIH HHS GM31107NIGMS NIH HHS R01 GM027870NIGMS NIH HHS R01 GM031107NIGMS NIH HHS R37 GM031107
6 · The paper itself

Abstract

Hsp70 molecular chaperones are ubiquitous. By preventing aggregation, promoting folding, and regulating degradation, Hsp70s are major factors in the ability of cells to maintain proteostasis. Despite a wealth of functional information, little is understood about the evolutionary dynamics of Hsp70s. We undertook an analysis of Hsp70s in the fungal clade Ascomycota. Using the well-characterized 14 Hsp70s of Saccharomyces cerevisiae, we identified 491 orthologs from 53 genomes. Saccharomyces cerevisiae Hsp70s fall into seven subfamilies: four canonical-type Hsp70 chaperones (SSA, SSB, KAR, and SSC) and three atypical Hsp70s (SSE, SSZ, and LHS) that play regulatory roles, modulating the activity of canonical Hsp70 partners. Each of the 53 surveyed genomes harbored at least one member of each subfamily, and thus establishing these seven Hsp70s as units of function and evolution. Genomes of some species contained only one member of each subfamily that is only seven Hsp70s. Overall, members of each subfamily formed a monophyletic group, suggesting that each diversified from their corresponding ancestral gene present in the common ancestor of all surveyed species. However, the pattern of evolution varied across subfamilies. At one extreme, members of the SSB subfamily evolved under concerted evolution. At the other extreme, SSA and SSC subfamilies exhibited a high degree of copy number dynamics, consistent with a birth-death mode of evolution. KAR, SSE, SSZ, and LHS subfamilies evolved in a simple divergent mode with little copy number dynamics. Together, our data revealed that the evolutionary history of this highly conserved and ubiquitous protein family was surprising complex and dynamic.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceBase SequenceEvolution, MolecularFungal ProteinsGenes, FungalGenetic VariationHSP70 Heat-Shock ProteinsMitochondrial ProteinsMultigene FamilyPhylogenySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Homology, Amino AcidAdenosine TriphosphatasesFungal ProteinsHSP70 Heat-Shock ProteinsKAR2 protein, yeastMitochondrial ProteinsSaccharomyces cerevisiae ProteinsSSA3 protein, S cerevisiaeSSB2 protein, S cerevisiaeSSQ1 protein, S cerevisiaeAscomycota genomesbirth-and-deathconcerted evolutiongene duplicationmolecular chaperonesmulti gene family

Identifiers

PMID24277689
PMCPMC3879978
OpenAlexW2112330287

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.