Evidence map›Paper›PMID 24275651›Full record

ArticleThe Journal of biological chemistry2014

A catalytically essential motif in external loop 5 of the bacterial oligosaccharyltransferase PglB.

Christian Lizak, Sabina Gerber, Daria Zinne, Gaëlle Michaud, Mario Schubert, Fan Chen, Monika Bucher, Tamis Darbre, Renato Zenobi, Jean-Louis Reymond and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Christian LizakFrom the Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Schafmattstrasse 20, 8093 Zurich, Switzerland.
Sabina Gerber
Daria Zinne
Gaëlle Michaud
Mario Schubert
Fan Chen
Monika Bucher
Tamis Darbre
Renato Zenobi
Jean-Louis Reymond
Kaspar P Locher
ETH Zurich · CHInstitute of Molecular Biology and Biophysics · RUUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asparagine-linked glycosylation is a post-translational protein modification that is conserved in all domains of life. The initial transfer of a lipid-linked oligosaccharide (LLO) onto acceptor asparagines is catalyzed by the integral membrane protein oligosaccharyltransferase (OST). The previously reported structure of a single-subunit OST enzyme, the Campylobacter lari protein PglB, revealed a partially disordered external loop (EL5), whose role in catalysis was unclear. We identified a new and functionally important sequence motif in EL5 containing a conserved tyrosine residue (Tyr293) whose aromatic side chain is essential for catalysis. A synthetic peptide containing the conserved motif can partially but specifically rescue in vitro activity of mutated PglB lacking Tyr293. Using site-directed disulfide cross-linking, we show that disengagement of the structurally ordered part of EL5 is an essential step of the glycosylation reaction, probably by allowing sequon binding or glyco-product release. Our findings define two distinct mechanistic roles of EL5 in OST-catalyzed glycosylation. These functions, exerted by the two halves of EL5, are independent, because the loop can be cleaved by specific proteolysis with only slight reduction in activity.

Indexed as

Amino Acid MotifsAmino Acid SequenceAsparagineBacterial ProteinsBinding SitesBiocatalysisCampylobacter lariDisulfidesElectrophoresis, Polyacrylamide GelGlycosylationHexosyltransferasesLipopolysaccharidesMagnetic Resonance SpectroscopyMembrane ProteinsModels, MolecularMolecular Sequence DataAsparagineBacterial ProteinsDisulfidesdolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferaseslipid-linked oligosaccharidesLipopolysaccharidesMembrane ProteinsPeptidesTyrosineCampylobacterCysteine-mediated Cross-linkingEnzyme CatalysisEnzyme KineticsEnzyme MechanismsGlycoprotein BiosynthesisGlycosyltransferasesMembrane EnzymesOligosaccharideProtein Structure

Identifiers

PMID24275651
PMCPMC3887201
OpenAlexW2033884767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.