ArticleBioinformatics (Oxford, England)2014
Pathway Commons at virtual cell: use of pathway data for mathematical modeling.
Article in Bioinformatics (Oxford, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
7 citing papers in PubMed.
- DBHR: a collection of databases relevant to human research.Future science OA · 2022Review
- Computational modeling of RNase, antisense ORF0 RNA, and intracellular compartmentation and their impact on the life cycle of the line retrotransposon.Computational and structural biotechnology journal · 2021Article
- CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures.Bioinformatics (Oxford, England) · 2019Article
- Large-scale automated machine reading discovers new cancer-driving mechanisms.Database : the journal of biological databases and curation · 2018Article
- Critical Genomic Networks and Vasoreactive Variants in Idiopathic Pulmonary Arterial Hypertension.American journal of respiratory and critical care medicine · 2016Article
- GCGene: a gene resource for gastric cancer with literature evidence.Oncotarget · 2016Article
- Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events.BMC systems biology · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
unlabelledPathway Commons is a resource permitting simultaneous queries of multiple pathway databases. However, there is no standard mechanism for using these data (stored in BioPAX format) to annotate and build quantitative mathematical models. Therefore, we developed a new module within the virtual cell modeling and simulation software. It provides pathway data retrieval and visualization and enables automatic creation of executable network models directly from qualitative connections between pathway nodes. AVAILABILITY AND IMPLEMENTATION: Available at Virtual Cell (http://vcell.org/). Application runs on all major platforms and does not require registration for use on the user’s computer. Tutorials and video are available at user guide page.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.