Evidence map›Paper›PMID 24273181›Full record

Trial reportThe Journal of infectious diseases2014

Phenotypic evaluation of previously uncharacterized cytomegalovirus DNA polymerase sequence variants detected in a valganciclovir treatment trial.

Sunwen Chou, Guy Boivin, Jane Ives, Robert Elston

Abstract readClinical Trial
In one paragraph

Trial report in The Journal of infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 36 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Practical updates in clinical antiviral resistance testing.Journal of clinical microbiology · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Definitions of Resistant and Refractory Cytomegalovirus Infection and Disease in Transplant Recipients for Use in Clinical Trials.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
  10. Article
  11. Article
  12. Approach to drug-resistant cytomegalovirus in transplant recipients.Current opinion in infectious diseases · 2015
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sunwen ChouDivision of Infectious Disease, Oregon Health and Science University and VA Medical Center, Portland.
Guy Boivin
Jane Ives
Robert Elston
Roche (United Kingdom) · GBUniversité Laval · CA

Funding

ANTIVIRAL DRUG RESISTANCE IN HUMAN CYTOMEGALOVIRUSR01AI039938 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CHOU, SUNWEN · 1996 to 2013
$3.4M
CIHR MOP-86583NIAID NIH HHS R01 AI039938NIAID NIH HHS R01 AI39938
6 · The paper itself

Abstract

backgroundIn a large randomized trial comparing oral valganciclovir and intravenous ganciclovir for treatment of cytomegalovirus disease in solid organ transplantation, confirmed genotypic drug resistance was uncommon (<5%), but definitive interpretation was limited by the detection of 110 uncharacterized UL54 viral DNA polymerase sequence variants.

methodsBased on treatment history and genetic locus of the sequence changes, 39 of the sequence variants were prioritized for recombinant phenotyping by construction of cloned viral mutants and drug susceptibility testing in cell culture.

resultsFour amino acid substitutions were newly confirmed to alter ganciclovir susceptibility: A505V and I726T conferred a borderline decrease in ganciclovir and cidofovir susceptibility, while Q578L and G841S conferred slightly decreased ganciclovir and foscarnet susceptibility. A nonviable phenotype was found for 8 mutations distributed among amino terminal, exonuclease and catalytic domains. Retesting of stored study specimens could not confirm the original detection of >20 sequence variants, including the nonviable mutations and several resistance mutations.

conclusionsNewly phenotyped UL54 sequence variants did not significantly change the reported incidence of drug resistance in the clinical trial. Unrecognized sequence variants in diagnostic genotyping reports should be confirmed by additional testing in order to improve clinical decision making.

Indexed as

Antiviral AgentsCytomegalovirusCytomegalovirus InfectionsDNA-Directed DNA PolymeraseDNA, ViralDrug Resistance, ViralGanciclovirGenomic Structural VariationGenotypeHumansMutationPhenotypePolymerase Chain ReactionValganciclovirViral ProteinsAntiviral AgentsDNA-Directed DNA PolymeraseDNA, ViralGanciclovirUL54 protein, Human herpesvirus 5ValganciclovirViral ProteinsAntiviral drug resistancecytomegalovirusganciclovirvalganciclovir

Identifiers

PMID24273181
PMCPMC3969548
OpenAlexW2133018625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.