Evidence map›Paper›PMID 24272962›Full record

ArticleJournal of experimental botany2014

DER containing two consecutive GTP-binding domains plays an essential role in chloroplast ribosomal RNA processing and ribosome biogenesis in higher plants.

Young Jeon, Chang Sook Ahn, Hyun Ju Jung, Hunseung Kang, Guen Tae Park, Yeonhee Choi, Jihwan Hwang, Hyun-Sook Pai

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  3. Plant organellar RNA maturation.The Plant cell · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Young JeonDepartment of Systems Biology, Yonsei University, Seoul 120-749, Korea.
Chang Sook Ahn
Hyun Ju Jung
Hunseung Kang
Guen Tae Park
Yeonhee Choi
Jihwan Hwang
Hyun-Sook Pai
Yonsei University · KRChonnam National University · KRNew Generation University College · ETPusan National University · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigated protein characteristics and physiological functions of DER (Double Era-like GTPase) of higher plants. Nicotiana benthamiana DER (NbDER) contained two tandemly repeated GTP-binding domains (GD) and a C-terminal domain (CTD) that was similar to the K-homology domain involved in RNA binding. Both GDs possessed GTPase activity and contributed to the maximum GTPase activity of NbDER. NbDER fused to green fluorescent protein was localized primarily to chloroplast nucleoids. Arabidopsis der null mutants exhibited an embryonic lethal phenotype, indicating an essential function of DER during plant embryogenesis. Virus-induced gene silencing of NbDER resulted in a leaf-yellowing phenotype caused by disrupted chloroplast biogenesis. NbDER was associated primarily with the chloroplast 50S ribosomal subunit in vivo, and both the CTD and the two GD contributed to the association. Recombinant proteins of NbDER and its CTD could bind to 23S and 16S ribosomal RNAs in vitro. Depletion of NbDER impaired processing of plastid-encoded ribosomal RNAs, resulting in accumulation of the precursor rRNAs in the chloroplasts. NbDER-deficient chloroplasts contained significantly reduced levels of mature 23S and 16S rRNAs and diverse mRNAs in the polysomal fractions, suggesting decreased translation in chloroplasts. These results suggest that DER is involved in chloroplast rRNA processing and ribosome biogenesis in higher plants.

Indexed as

RNA Processing, Post-TranscriptionalChloroplastsGene Knockout TechniquesGene SilencingGTP-Binding ProteinsGTP PhosphohydrolasesMutagenesis, InsertionalNicotianaPhenotypePlant LeavesPlant ProteinsProtein Structure, TertiaryRecombinant Fusion ProteinsRibosomesRNA-Binding ProteinsRNA, PlantGTP-Binding ProteinsGTP PhosphohydrolasesPlant ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, PlantRNA PrecursorsRNA, RibosomalChloroplast abnormalityNicotiana benthamianaribosomal RNA processingribosome associationRNA bindingvirus-induced gene silencing.

Identifiers

PMID24272962
PMCPMC3883289
OpenAlexW2112041831

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.