Evidence map›Paper›PMID 24272907›Full record

ArticleProtein science : a publication of the Protein Society2014

Structure of human peptidyl-prolyl cis-trans isomerase FKBP22 containing two EF-hand motifs.

Sergei P Boudko, Yoshihiro Ishikawa, Jay Nix, Michael S Chapman, Hans Peter Bächinger

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Ehlers-Danlos syndromes.Nature reviews. Disease primers · 2020
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. FK506-Binding Proteins and Their Diverse Functions.Current molecular pharmacology · 2015
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sergei P BoudkoResearch Department, Shriners Hospital for Children, Portland, Oregon, 97239; Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, Oregon, 97239.
Yoshihiro Ishikawa
Jay Nix
Michael S Chapman
Hans Peter Bächinger
Oregon Health & Science University · USLawrence Berkeley National Laboratory · USShriners Hospitals for Children - Portland · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The FK506-binding protein (FKBP) family consists of proteins with a variety of protein-protein interaction domains and versatile cellular functions. It is assumed that all members are peptidyl-prolyl cis-trans isomerases with the enzymatic function attributed to the FKBP domain. Six members of this family localize to the mammalian endoplasmic reticulum (ER). Four of them, FKBP22 (encoded by the FKBP14 gene), FKBP23 (FKBP7), FKBP60 (FKBP9), and FKBP65 (FKBP10), are unique among all FKBPs as they contain the EF-hand motifs. Little is known about the biological roles of these proteins, but emerging genetics studies are attracting great interest to the ER resident FKBPs, as mutations in genes encoding FKBP10 and FKBP14 were shown to cause a variety of matrix disorders. Although the structural organization of the FKBP-type domain as well as of the EF-hand motif has been known for a while, it is difficult to conclude how these structures are combined and how it affects the protein functionality. We have determined a unique 1.9 Å resolution crystal structure for human FKBP22, which can serve as a prototype for other EF hand-containing FKBPs. The EF-hand motifs of two FKBP22 molecules form a dimeric complex with an elongated and predominantly hydrophobic cavity that can potentially be occupied by an aliphatic ligand. The FKBP-type domains are separated by a cleft and their putative active sites can catalyze isomerazation of two bonds within a polypeptide chain in extended conformation. These structural results are of prime interest for understanding biological functions of ER resident FKBPs containing EF-hand motifs.

Indexed as

Catalytic DomainEF Hand MotifsEhlers-Danlos SyndromeEndoplasmic ReticulumHumansHydrophobic and Hydrophilic InteractionsModels, MolecularMutationPeptidylprolyl IsomeraseProtein ConformationProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryTacrolimus Binding ProteinsFKBP10 protein, humanFKBP14 protein, humanPeptidylprolyl IsomeraseTacrolimus Binding Proteinscrystal structureEF-hand motifEhlers-Danlos syndromeFKBP14FKBP22peptidyl-prolyl cis-trans isomerase

Identifiers

PMID24272907
PMCPMC3892300
OpenAlexW1537816308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.